BAC Information

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BAC

Clone NameMSMg01-434E11
Chromosome16 (Build37)
Map Location 85,761,566 - 85,761,727
singlet/doubletsinglet
Overlap genenone
Upstream geneJam2, Atp5j, LOC100039950, Gabpa, Gm311, App, Cyyr1, LOC100039994, LOC622000
Downstream geneAdamts1, Adamts5, LOC100040025, LOC100039780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434E11.T7 (MSMg01no434_e11.b1)MSMg01-434E11.TJ (MSMg01no434_e11.g1)
ACCAG525863AG525864
length726671
length of high quality
(start - end)
272 (36 - 307)162 (74 - 235)
definitionCHROMAT_FILE: MSMg01no434_e11.b1 PHD_FILE: MSMg01no434_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:39 2005CHROMAT_FILE: MSMg01no434_e11.g1 PHD_FILE: MSMg01no434_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATAC
ATTTACAAATAATCATGATCATCTCTAACCTTTGTTTTCTCCCTCAAACC
CATTATTATCATGCCCCCTTCCAACTTTATATCCTTTTTTATGTTGATAG
CTCTTAAATCCATTAATTAGTACTACCCATATGCAATGGGTATGGAGCCA
TCCACTGAAGCTGGGGTGGAAGAATCAGTCTTCTATGATAGGCTATATCT
TTAAAGAACATTTTGTTAGGCAATCATGACCTCATCTGATAAAAACAACA
GGCTTCAGAGTTCTTTGTCTGATCAATTTTGTATTTATATTCTGTGCAAT
TGTGCTTCTGCACACAAAATCATGTGGCAATCATTGCTGAAGCTAACAGA
ATGCTAATGGCATGGACGTGATTCAGGTCACTGCTAAAATATTAGCAGGA
AGCGTTAAGCTGAATGCCAAATCCTGGCAATGTTCTATGCTTACGGACCT
TGTTACTTTTAAGATCTCAACACAAATTCGTAAAGCAGAAGGCATGCATG
CGTTTCCCTCTGTCTCAGTGTTAGGTTTCCAGTCCCATTCATTTGACTTG
TGGCTTCCCAGCTGGTCATGCCTTTCTTTCTGGCAGTAAGAGTCAAGATG
ATTTCTTATTTGGCTGAACGCTCCCAAATCATAAAGCTTAAGAAGTCTAA
ACAATCCATAAAACTTTCCCTTGTTA
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCCTGTCTTCATCACTCAGTCTGCAA
CTGCCAGCCAAGCAAAATAAAATGGACTTTAAGTCATAAAACTAATAGAT
GACAACACAGTTTCTGCTCGTGTCATATGCAGGAAACGGGGGTGGCTGGG
GGTTTGGCACATGGGAAGGGATATTGTGAGTAACAGAATAAAGCCTGAGG
TTGTTAGGGAAGGACAGAAAACCCCCCGGGGAAGAATATGAAAAAAATAC
CTACCCCTTCTCATCAAAAGGTTTTTGTCTTTCCCCCGGGGGAATGGGGG
GGGGAAAAGGGGGGGAAATTTTTTTTAATCCCCCCCAAAAGGGGAACATT
TCCCCCCCCTTTGGTGTTCCCCCCAGGGGCCCCCTATATTTTTGCCCACA
AAAAAACCCGGGGGTATAATTCCCCCCTCCTTAAAAAAGACTCCTTTTCA
TTCGGTTCTTCGCGGGTTCTTGGTGGCGCCAACATTTTTCTCTCGTGGGG
TATAATAAAAAACAAATCTCTGGTCTCTTTTCCTGTATCAACTACCATGT
CTTTCTTATTATACTTCTTCTTCCTTCCTCCGTCCTGTCATCTATCCCCC
CCCTCCCCTTATTATCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_e11.g1 MSMg01no434_e11.g1 CHROMAT_FILE:
MSMg01no434_e11.g1 PHD_FILE: MSMg01no434_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:39 2005
         (162 letters)



>mm_chr16_85761366_85761927
          Length = 562

 Score =  298 bits (154), Expect = 1e-85
 Identities = 160/162 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccctgtcttcatcactcagtctgcaactgccagccaagcaaaataaaatggactttaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tccctgtcttcatcactcagtctgcaactgccagccaagcaaaataaaatggactttaag 303

                                                                       
Query: 61  tcataaaactaatagatgacaacacagtttctgctcgtgtcatatgcaggaaacgggggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tcataaaactaatagatgacaacacagtttctgctcgtgtcatatgcaggaaacgggggt 243

                                                     
Query: 121 ggctgggggtttggcacatgggaagggatattgtgagtaaca 162
           ||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 242 ggctgggggtttggcacataggaagggatattgtaagtaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space:    85316
Effective search space used:    85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)