BAC Information

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BAC

Clone NameMSMg01-434F04
Chromosome16 (Build37)
Map Location 7,611,042 - 7,611,447
singlet/doubletsinglet
Overlap genenone
Upstream geneA2bp1
Downstream gene4930511J11Rik, BC024814, Abat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434F04.T7 (MSMg01no434_f04.b1)MSMg01-434F04.TJ (MSMg01no434_f04.g1)
ACCAG525895AG525896
length744756
length of high quality
(start - end)
506 (61 - 566)329 (68 - 396)
definitionCHROMAT_FILE: MSMg01no434_f04.b1 PHD_FILE: MSMg01no434_f04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:42 2005CHROMAT_FILE: MSMg01no434_f04.g1 PHD_FILE: MSMg01no434_f04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAATCCGCGGAATTCACAT
GGTATACCGTGAGAACCAACTTCTTAAAGTTGTCCTTTGGCCTCCAAATG
AGAGGTCTTGAACTCAAGTGTAAGCATAAGGTTGGCATTGACTTGAAGTA
AACGCAACTTGCAAAGCAAAGCAAAGCAAAGCAAAGCAAAGCAAAGCAAA
GCAAAGCAAAGCAAAGCAAAGCTAAGCAAAGCAAAAGCTAAGCTAAGCTA
AGCTAAGCTAACAGCCTCACCTAACTTCCTCTAATAAGCTGCTTAGTTTC
ATTGTGCTTCTGTTTCCCTCTACCCAAAGCAGAGCTCACAAACTGTCCCT
ATCTTACATGCCCATGTCCCACACATATGGAGATATAGAGACCCACAGTT
CTTTTCTGTGTCTCCTTCCTTTTTGCAAGTTACCAGACATGTAACCATGA
ACTTCTTGGCTTCAAATGAGAGAACTGTTACTTCACCGACATGGAAGGGA
AGTGTAAACTCTTCCCTAGTTTCTCATGGTTTCTGTAGGTGTGTGGCCAT
GAGTTGCATTTTTCGGTTTACAGACATATCACCCCCATCTCAGACTACCT
TGCTGTCTTTTTCCCCCTGTGTTTCTTGTTGGTCCACATTGCACCCAACA
GTACACCCCTGGAAACAGAAACTAAATAGGTTCCTTCTATTTCCTTCTTC
AAAACATAATTTTCATTAAACATTTCTTTTATTTTCCCTTCACN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATCTTGGAAGATTTTACCTTTGATCAGTATGAA
GTGCCCTCCTTGTCTTTTTTGAGAACTTTGGGTTGGAAGTTGATTTTATG
TGACATTAGAATGGCTACTCCAGCTTGTTTCTTCAGACCATTTGCTTGGA
AAATTGTTTTCCAGCCTTTCACCCTGAGGTAGTGTCTGTCTTTGTCCCCG
AGGTGGGTTTCCTATATGCATCAAAATGTTGGGTCCTGTTTATGTAGCCA
GTCTGTTAGTCTATGTCTTTTTATTGGGGAATTGAGTTCATTGATACTAA
GAGATATTAAGGAGAAGTAATTGTTGCTTCCTGTTATTTTTGATGTTTGA
GCTGCGATTCCGTCCTTGCATCTATCTTCTTTTTTAGTTTGCCTTCCCAC
CATCTTCTTCGTCTTTCAAGCTCTACTCTACTCTCTTGTTCGCATTCTCC
CTCTTTTATCTTTTTTGGTTCCTTCTCAACTTCTCACTCTCATCTTCGTT
TTTTTTTCACTCTTTGACTTTCCATACCTCTCTCGCTCCTCTTCCTTCTA
TTCTTTTCCCCTTTCCTCTTTCTTAGTACCTTGTCTACTGCGATCTGCAT
CCTTTTTCTCCTTTTTCTTTTCTCCTTTCTCCCTCCCCTTCTCTTTCCCT
CTTACGTCCTTCTCTTTCTCCTTCGCTCTCTTTCCTCTTTATCATCTTAC
CTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_f04.b1 MSMg01no434_f04.b1 CHROMAT_FILE:
MSMg01no434_f04.b1 PHD_FILE: MSMg01no434_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:42 2005
         (506 letters)



>mm_chr16_7610644_7611549
          Length = 906

 Score =  777 bits (402), Expect = 0.0
 Identities = 405/406 (99%)
 Strand = Plus / Minus

                                                                       
Query: 101 gcaaagcaaagcaaagcaaagcaaagcaaagcaaagcaaagcaaagcaaagcaaagcaaa 160
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gcaaagcaaagcaaagcaaagcaaagcaaagcaaagcaaagcaaagcaaagcaaagcaaa 745

                                                                       
Query: 161 gctaagcaaagcaaaagctaagctaagctaagctaagctaacagcctcacctaacttcct 220
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gctaagcaaagcaaaagctaagctaagctaagctaagctaacagcctcacctaacttcct 685

                                                                       
Query: 221 ctaataagctgcttagtttcattgtgcttctgtttccctctacccaaagcagagctcaca 280
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 684 ctaataagctgcttagtttcattgtgcttctgtttccctctacccaaagcagggctcaca 625

                                                                       
Query: 281 aactgtccctatcttacatgcccatgtcccacacatatggagatatagagacccacagtt 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aactgtccctatcttacatgcccatgtcccacacatatggagatatagagacccacagtt 565

                                                                       
Query: 341 cttttctgtgtctccttcctttttgcaagttaccagacatgtaaccatgaacttcttggc 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cttttctgtgtctccttcctttttgcaagttaccagacatgtaaccatgaacttcttggc 505

                                                                       
Query: 401 ttcaaatgagagaactgttacttcaccgacatggaagggaagtgtaaactcttccctagt 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttcaaatgagagaactgttacttcaccgacatggaagggaagtgtaaactcttccctagt 445

                                                         
Query: 461 ttctcatggtttctgtaggtgtgtggccatgagttgcatttttcgg 506
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttctcatggtttctgtaggtgtgtggccatgagttgcatttttcgg 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 83
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)