BAC Information

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BAC

Clone NameMSMg01-435O07
Chromosome16 (Build37)
Map Location 47,077,627 - 47,078,073
singlet/doubletsinglet
Overlap genenone
Upstream geneCd96, AL024110, Pvrl3, LOC628757
Downstream geneLOC628776, EG667741, EG639644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435O07.T7 (MSMg01no435_o07.b1)MSMg01-435O07.TJ (MSMg01no435_o07.g1)
ACCAG527091AG527092
length752744
length of high quality
(start - end)
506 (52 - 557)451 (79 - 529)
definitionCHROMAT_FILE: MSMg01no435_o07.b1 PHD_FILE: MSMg01no435_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:48 2005CHROMAT_FILE: MSMg01no435_o07.g1 PHD_FILE: MSMg01no435_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATGTTTCCGGATTGGCAGGATTAATATATTAAAATGGC
TATCTTGCCAAAAGCAATCTACAGATTCAATGCACTCCCCATCAAAATTT
CAACTCAATTTTTCATAGAGTTAGAAAGAAGAATTCTCAAATTCATTTGG
AACAACAGAAAAACCAGGATAGCAAAAACTATCTGATTGGTGTGAGGTGG
AATCTCAGGGTCATTTTGATTTGCATTTCCCTGATGACTAAGGATGTTGA
ACATTTCTTTAAGTTCTTCTCAGAATTGGTAAAGATCTTTTCCCAATCTG
TGGGTTACCACAGAAGCTTTTCAATTTTATGAGATCCTATTTTTCATTTG
TTGATCTTAAATCATAAACCATTAGTGTTCTGTTCTGGAAGTTTTCTCCT
CTGCCCAAGTATTCAAGGCTCTTCCCCACTCTCTCTTCTATTAGATTCAG
CATATCTGGTTTTATGTGAATGTCTTAACCAACTTGGACTTGAGCTTTGT
ACCAGGAGAGAAGAATGGATCAATTTGTAGGAGAGAGCTGGTTTCTTAAA
CTGACATTATGAGTAAAATTTATCAGTTCTCTGTCTTACCTAAATTTCCT
CCAGAAAGTTAAACCAAAGAATTTCAACTCTACTTCTCCCTAAAGGAATA
AACATTATTCCAAAAAAACCTCTAAACCAAAATTTTGGTTAGCTTCTCCC
CG
TTTTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTAGTTGAGAACATGACTGA
GTAAGAGATATAATTTTTGAAGTTTGGTTATGAAATATATAGTCCTCAAA
TAAATGTTTTATTGTGATACACTTGAAGTACCATCTTGACTTCAGAACAT
ACTGTGGTATAAGTTAAGGAACTCAGCATGAAGAATTAAGGTTTGTTCCC
TGGGGGATTTATTTAGCTATTAGAGTAGAGAAATTTTAATGCATGTACAC
ACAATTGAATCTACCTACAAGCAACCTGCACTCCACAGCTTTCATTCTGA
ATTCATACCATAATTATATAGACATTCTTTTCTTTTTATAGACTTGACAT
CTCATTAACTTTAATGTGAAATGTTTTTATTTATGTGTAAGATTTTAATT
GTAAAGCTTATAAAATTATTTTTAAAATAATTGGCCTGCAAGCATTTTCA
AATCTTTTAGTGACTTAGGATCAAGGAAATTACACTGGAATTTATAAAAT
ATACTTACAGCCAAATCCCAATATTTTATCAAGAGTACAGAAGTTTGCGT
GAAAAATTTCTTTGATTTTGACAATCGAAAGATTGGGTGTTGTTGATAAA
ATTCACTGGGAGAGAACTTACCCCCCCCCCGTGAATTTTTATTTTTTGTT
CCCCCCCGTTTAGAATAAATTCTACTCCCCTCTTGGTTCCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_o07.g1 MSMg01no435_o07.g1 CHROMAT_FILE:
MSMg01no435_o07.g1 PHD_FILE: MSMg01no435_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:48 2005
         (451 letters)



>mm_chr16_47077423_47078273
          Length = 851

 Score =  818 bits (423), Expect = 0.0
 Identities = 441/447 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   agttgagaacatgactgagtaagagatataatttttgaagtttggttatgaaatatatag 64
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 agttgagaacatgactgagtaatagatataatttttgaagtttggttatgaaatatatag 264

                                                                       
Query: 65  tcctcaaataaatgttttattgtgatacacttgaagtaccatcttgacttcagaacatac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcctcaaataaatgttttattgtgatacacttgaagtaccatcttgacttcagaacatac 324

                                                                       
Query: 125 tgtggtataagttaaggaactcagcatgaagaattaaggtttgttccctgggggatttat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtggtataagttaaggaactcagcatgaagaattaaggtttgttccctgggggatttat 384

                                                                       
Query: 185 ttagctattagagtagagaaattttaatgcatgtacacacaattgaatctacctacaagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 ttagctattagagtagagaaattttaatgcatgtacacacaattgaatctacctacaggc 444

                                                                       
Query: 245 aacctgcactccacagctttcattctgaattcataccataattatatagacattcttttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacctgcactccacagctttcattctgaattcataccataattatatagacattcttttc 504

                                                                       
Query: 305 tttttatagacttgacatctcattaactttaatgtgaaatgtttttatttatgtgtaaga 364
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttttatagacttgatgtctcattaactttaatgtgaaatgtttttatttatgtgtaaga 564

                                                                       
Query: 365 ttttaattgtaaagcttataaaattatttttaaaataattggcctgcaagcattttcaaa 424
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 565 ttttaattgtaaagcttataaaattattttaaaaataattggcctgcaagcattttcaaa 624

                                      
Query: 425 tcttttagtgacttaggatcaaggaaa 451
           ||||||||| |||||||||||||||||
Sbjct: 625 tcttttagtaacttaggatcaaggaaa 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)