Query= MSMg01no436_n20.b1 MSMg01no436_n20.b1 CHROMAT_FILE:
MSMg01no436_n20.b1 PHD_FILE: MSMg01no436_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:03 2005
(519 letters)
>mm_chr16_88131703_88132625
Length = 923
Score = 849 bits (439), Expect = 0.0
Identities = 492/519 (94%), Gaps = 17/519 (3%)
Strand = Plus / Plus
Query: 5 gaattcagtcagccttctctgctctttcctctggataccag-caaagagctcaccatcaa 63
|||||||||||||| ||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 205 gaattcagtcagcccactctgctctttcccctggataccagtcaaagagcccaccatcaa 264
Query: 64 ccaatatccatagaaattacttcaaatacaaacttcaatattcgcagaggttccccacaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccaatatccatagaaattacttcaaatacaaacttcaatattcgcagaggttccccacaa 324
Query: 124 aataaact---gaacattatcctctcatgttgaatacacccaaagctcagatgtgtcttg 180
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 aataaactcctgaacattatcctctcatgttgaatacacccaaagctcagatgtttcttg 384
Query: 181 actacatgataggtatacaacaacatgccagataaatgggtaaattttcctagaactgca 240
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtacatgaaaggtatacaacaacatgccagataaatgggtaaattttcctagaactgca 444
Query: 241 tcgatttctcttagatccttctgctatatcaaatgcttgtatacccattcagggacataa 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 445 tcgatttctcttagatccttctgctatatcaaatgcttgtataccaattcagggacataa 504
Query: 301 tttgaagggttggagggatcctcaggcactcaggcagagattgagaagaatacaaaggct 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 505 tttgaagggttggagggatcctcaggcactcaggcagagattgagtagaatacaaagg-- 562
Query: 361 aggctgagaggaccacactgagtgtctgggaacttgaagaatgatacacatggacttgct 420
||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 563 -----------accacactgagtgtctgggaacttgaagaatgagacacatggacttgct 611
Query: 421 gtcttttcattagaatggcagaatgagcaaaaacacagcagtgggaaaatcctctctagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gtcttttcattagaatggcagaatgagcaaaaacacagcagtgggaaaatcctctctagt 671
Query: 481 gtgaagtccctctttctatcttagaagcaacacagaagt 519
|||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gtgaagtccctctttctatcttagaagcaacacagaagt 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 923
Length adjustment: 10
Effective length of query: 509
Effective length of database: 913
Effective search space: 464717
Effective search space used: 464717
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_n20.g1 MSMg01no436_n20.g1 CHROMAT_FILE:
MSMg01no436_n20.g1 PHD_FILE: MSMg01no436_n20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:03 2005
(177 letters)
>mm_chr16_88290501_88291077
Length = 577
Score = 310 bits (160), Expect = 4e-89
Identities = 172/176 (97%), Gaps = 2/176 (1%)
Strand = Plus / Minus
Query: 1 catttgcctagggaccaatagattagatttgatccgtcttggggatgcaagactctatgg 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 319 catttgcctagggaccaatagattagatttgatccgtcttggggatgctagactcaatgg 260
Query: 61 actttccagcaccacagcgcgaagttgaggggctgcatgtgtgagtgcatgctgtaaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 actttccagcaccacagcgcgaagttgaggggctgcatgtgtgagtgcatgctgtaaatt 200
Query: 121 gtgtgtgtgtgtgtgtgtgcgcgcgcgcgcgcgcccgcgctctcgcatgtgagcac 176
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 199 gtgtgtgtgtgtgtgtgtgc-c-cgcgcgcgcgcccgcgctctcgcatgtgagcac 146
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space: 96161
Effective search space used: 96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
