BAC Information

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BAC

Clone NameMSMg01-438I10
Chromosome16 (Build37)
Map Location 88,884,434 - 88,884,674
singlet/doubletsinglet
Overlap genenone
Upstream geneGrik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5
Downstream geneKrtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438I10.T7 (MSMg01no438_i10.b1)MSMg01-438I10.TJ (MSMg01no438_i10.g1)
ACCAG529099AG529100
length766801
length of high quality
(start - end)
514 (40 - 553)241 (68 - 308)
definitionCHROMAT_FILE: MSMg01no438_i10.b1 PHD_FILE: MSMg01no438_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:20 2005CHROMAT_FILE: MSMg01no438_i10.g1 PHD_FILE: MSMg01no438_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CACCTGATTTACACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACA
TCCTTAATCATCAGGAAAATGCAAATCAAAACAACCCTGAGATTCCACGT
CACACCAGTCAGAATGGCTAAGATAAAAAATTCAGGTGACAGCAAATGCT
GGCAGGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGC
AAGCTTGTACAACGACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATT
GGACATAGTACTACTGGAGGATCCCGCAATACCTCTCCTGGGCATATATC
CAGAAGATGTTCCAACCGGTAAGAAGGACACAAGCTCCACTATGTTCATA
GCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTC
AACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACT
ACTCAGCTATTACAAAGAATGAATTTATGAAATTCCTAAGCAAATGGATG
GACCTGGAGGGCTTTATCCTGAGTGAGGTAACCCAATCACAAAGGAACTT
GCACAATATGTACTCCCTGATAAATGGATATTATCCCAGAAACTTATGAT
ACCCAAGATATAAGACATAATTTGAATTTTTGATCTTAGCCATTCCTGAC
TGGTATGAAGGGGAATCTCCCGGGTTGGTTTTGAATTGTATTTCCCTGAA
TATTTAATGGCGTTGA
GTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCAAATATTCACTCACTTTTCATATTCATATTCTACACATCTTTC
CATTTAGTAATTTTTCTTTTAACTAATGTAGTTCAGTTCAGTATGAATAC
GAATGATAGTAAGTGCTGCTGTTAGACTTGCGTATTAATCAAGGGTGTAG
GTTCCTTCTTCACCCAGGGTAAGCTCCTTTGAGCCCAAGTTTTCTTATTT
GATTATTATTTTACTGGACTCCATAAGCGTAATAATACTCCAATGACTTG
ATTAGAGGGCTATTTCGTCNTTTTGATAGTTACCACAGATACTAATTTTC
AAGTTATTAATACTAACTATCCATAATATTGACAGGGATTACCCATAATA
ATAAGCAAGACCCACCTATGTATTATGTATTATACAGTATAATGCAGTTA
TTATGCTATTTAATATTGATTTATTGTTTCTGTGTATCTCTGTAGGATTA
TATGTTACTATTTAGAATATTTTCTTATTCTGTTTTATTATATACTGTTA
TTTTATTGCTAATCTTATTATTTCTGTTTTCCATGATTCTTCTCCGTTTT
TTTTCTTGTATTCTCCTCATCATTCCATATTTTTTCCATTTCTTTTACTC
TTTTCGTCCCCATTTTTTTTTTTTTTTTTCCTCCCCCCCCCTTTTCTTTT
CTATTTCCTTCTATTTTCTATTTTTCTCTTTCTCCTCTTTTCCCCTTTTT
TTTTTTTTTCTTCTTCTTCTTTCCTCTCACTCCCTTTTCCCTTTCTACTT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_i10.g1 MSMg01no438_i10.g1 CHROMAT_FILE:
MSMg01no438_i10.g1 PHD_FILE: MSMg01no438_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:20 2005
         (241 letters)



>mm_chr16_88884234_88884874
          Length = 641

 Score =  414 bits (214), Expect = e-120
 Identities = 235/242 (97%), Gaps = 2/242 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacttttcatattcatattctacacatctttccatttagtaatttttcttttaactaat 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tcacttttcatattcatattctacacatctttccatttagtaatttttgttttaactaat 382

                                                                       
Query: 61  gtagttcagttcagtatgaatacgaatgatagtaagtgctgctgttagacttgcgtatta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 gtagttcagttcagtatgaatacgaatgatagtaagtgctgctgttagacttgcatatta 322

                                                                       
Query: 121 atcaagggtgtaggttccttcttcacccagggtaagctcctttgagcccaagttttctta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 321 atcaagggtgtaggttccttcttcacccagggtaagctcctttgagcccaagttttc-aa 263

                                                                       
Query: 181 tttg-attattattttactggactccataagcgtaataatactccaatgacttgattaga 239
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agtgcattattattttactggactccataagcgtaataatactccaatgacttgattaga 203

             
Query: 240 gg 241
           ||
Sbjct: 202 gg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)