BAC Information

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BAC

Clone NameMSMg01-438J02
Chromosome16 (Build37)
Map Location 48,699,919 - 48,700,166
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023, Morc1
Downstream geneTrat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061, EG216818, LOC628903, Ift57
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438J02.T7 (MSMg01no438_j02.b1)MSMg01-438J02.TJ (MSMg01no438_j02.g1)
ACCAG529131AG529132
length814742
length of high quality
(start - end)
---249 (72 - 320)
definitionCHROMAT_FILE: MSMg01no438_j02.b1 PHD_FILE: MSMg01no438_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:23 2005CHROMAT_FILE: MSMg01no438_j02.g1 PHD_FILE: MSMg01no438_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCGGCCGCTATACGACTCCTATTTTCCAAAACTCCGCGGAATTCTCA
CCTGATTTCCACCACATGGCTGAGAAGCACCTGAGAACAAATGTTCAACA
TGGGGTGGGGAGGAGGGAGGGGCGAGACCAAAAACACCCTGANATTCTAC
CTCACACCATTCAAAATGNCTAAAATCAAAAATTCANNTGACCNCAAATG
CTGNCATGNATGTGNAAAAAGAAGAACACTCTCCATTTTTGGNGNAATTC
CAGCTTGACCACCCCCCGGAAAACCNCCTCGCNTTCCCCAAAAATTGCCG
ATANCCCCCCTTTTTTTCCCAAAACCTCCCCGGCCTATTTCCCAAAAATC
CCCCCTTNTAAAAAAACAAATTCCCCCCCAACTTTCTAAAACCTTTTTTT
TCCCACCCCCAAANCNNAAAAAACCCCACACCCGCCCTCACAAACANNNT
TTAAAAAAAAACGCCCCCGCTTTTCCCCCTCTTCACCCCCCCCCCCCGCT
TAAAAAAAAACCNTTCGTTACTCCTCTCCTCCCCCCNNNNCCTCTCCCCA
TCCCCCCCCCTCCGTCTTNCCCCCCCCCCCCCCCCGCTAATCCCTCCCCC
CNCTCCCTCCCCCCCCCCCNCCTCCCCCCCCTCCCCCCCTCCATCCTCCC
CNCCCCCCACACACAACCCCACTCCACCACCCCTCTCCCCCCCCTAAAAA
AAAAAACCCACCCCCACCACCTCCCTCCCTCCCCCTCCCCNCTTCCCCCC
CCCCCACTCCCNTCTCTATCCCCTTCCCCTCCTCCTTTTTTTCTTTTTTT
GTTTTTTTTTTTTG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAACCACACAAAGAACTTATGTGTCTGTAG
GAATGGCTGAAAGGAAAAAGAATGACAATTCCAGAGCTAGGGGGTCCAAG
TGGGAATGTGAGCGCCCGTCTGGAAAACAGTGGAGCAGATTCCTTAATAA
AATTAAATAAAGACAACGCAGCAGTGACAACACCAGAAACAGCAGCAACA
ACAAACCCCTTAAGGATGCAGCTAGGCATGGTGACATATGCCTGTCATCA
CAGAGCTGGGGAGACTGAGTTTTTATGGACGTGAGCTGAAGGGCCAGCCT
GAGGTACATAGTAAGGTGTATGCAATTTAGTGATTTTAACAAGGCCCAGA
GATGTATCTCAGTGGCGGAGCCTGGCTTAACACGAACACGCTCGGGGTTC
AAGCTCCAATACCAAAGGAAGTAAAACATATAAAATAAAAATCCCAAACA
TGCAATTACTTTATCACTAAGCAATGGCTCCATGGGATTTTACAGCTCCA
TTATTCATAAATAACAAAAAGTAAAGAAAGCATGGATGTTTTTGTGCTTC
GAATGATGAAGCACACTGTGGTGGATGTAGCCATATTATGAAATACTAGG
CAGCCATGAATAGAAACTAGTGGTGGTGCATGCAATAACAGGAGTTAAAT
CTCTAGAGGATTCTTCCTGATCTTAATTATTAGTTATTATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_j02.g1 MSMg01no438_j02.g1 CHROMAT_FILE:
MSMg01no438_j02.g1 PHD_FILE: MSMg01no438_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:23 2005
         (249 letters)



>mm_chr16_48699719_48700367
          Length = 649

 Score =  472 bits (244), Expect = e-138
 Identities = 247/248 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaccacacaaagaacttatgtgtctgtaggaatggctgaaaggaaaaagaatgacaattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaccacacaaagaacttatgtgtctgtaggaatggctgaaaggaaaaagaatgacaattc 260

                                                                       
Query: 61  cagagctagggggtccaagtgggaatgtgagcgcccgtctggaaaacagtggagcagatt 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagagctagggagtccaagtgggaatgtgagcgcccgtctggaaaacagtggagcagatt 320

                                                                       
Query: 121 ccttaataaaattaaataaagacaacgcagcagtgacaacaccagaaacagcagcaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttaataaaattaaataaagacaacgcagcagtgacaacaccagaaacagcagcaacaa 380

                                                                       
Query: 181 caaaccccttaaggatgcagctaggcatggtgacatatgcctgtcatcacagagctgggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaccccttaaggatgcagctaggcatggtgacatatgcctgtcatcacagagctgggg 440

                   
Query: 241 agactgag 248
           ||||||||
Sbjct: 441 agactgag 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)