BAC Information

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BAC

Clone NameMSMg01-441C06
Chromosome16 (Build37)
Map Location 11,283,090 - 11,468,065
singlet/doubletdoublet
Overlap geneTnfrsf17, 4933437K13Rik
Upstream geneEmp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik, Litaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1
Downstream geneLOC100043171, C530044N13Rik, 2700045P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441C06.T7 (MSMg01no441_c06.b1)MSMg01-441C06.TJ (MSMg01no441_c06.g1)
ACCAG531092AG531093
length751749
length of high quality
(start - end)
410 (75 - 484)242 (80 - 321)
definitionCHROMAT_FILE: MSMg01no441_c06.b1 PHD_FILE: MSMg01no441_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:49 2005CHROMAT_FILE: MSMg01no441_c06.g1 PHD_FILE: MSMg01no441_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,467,656 - 11,468,065)(11,283,090 - 11,283,330)
sequence
GGATCXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAAGAGAACCGCG
GAATTCTGGTGCTTTCTTGAATTGTTATAAGGGGAAGCAGAGAAGAAGGG
ATCTCCAATTATTTATGTCAAAATCTGCAAAAATAAGAAATATTTTTATA
TCTAATTGTGTGTGACACTTTGCTAGAACATTCCCTAGTAAGAGCTCTCC
TGGCAGCTCAAGCTTTTAGCTGGAGGAAGGAAGCCATGGCCACCAATCAA
AGCTGAGGAGGCAGGAGGACAAGACGGCAACAGTCAGACAGCTCGCCTTC
TGTCTGTCTCTCGGTCACACTGCCTGACTACATGAAACCACATTAAAACA
ATTGCAAAGCCACATTTAAACGTTCATTGTAAAGACTGAGAGCAAAATGC
GACCCGCAGGAAGGAGCCTTGGGACTGCTGCGCTGCCATAGGGTAGGAGA
CTATGGGAACAGAGAGCGAGCAGAGAGGAGCTACAAAGGAGGCTCAGGAA
GAATACACTCCAGCCCCAAAGATGAAGTCTGCAGCCTCTTTCAAAGTCGT
CGCCCTTGACAGCAAACAGCCTTAAATATTCTAAGAAAGCACTGCACCAT
TGGTCTCCATTTTCACCCCACTCATTAGGGTCTTCCCTTAAACCCCTTAC
TAGCTTTCATATGCTAACTGTGCTACCCCGGATGGTATCAACATGCTTGG
CATACTTGTCTTCACTGCCCGATGAACCCGATTCCTCACCTCTTGTGTTG
G
NCCCCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGAGAGAACAGTGGTAAC
AGCCCAAACTTGCCAACCTTCCTCTTTGCTGATGTCCAGACTTGGTTTCT
GCTGACCCTTGTGTCTTGGCACAGTGAGTGGGAACAATGCCCTCCTGAGC
CTCTGGCAGAGATCAGCAAACTCATTGTTCCCATGGCTAAGCAGAGCCAA
GAGGCAGATTGTAGCCTTAGGACTGTGGCTCACAGAGGCAAAGCTAACTT
TATACTGTGCCTGTGTATGTGGTTTTTATCACAGAACCCTTCAAACAGGC
TTTCATGAAGGGCTACAGGGCCCCATATAAGAAGGGTGTGGAGCATAGTC
TTTAGCAACACAGAAGTGCTCAATGATAGCATTTTACGATGTGATTCAAG
GAGGATGCATTTGCTTACAACTTTAACATACATGATTTTATTTGTTTTGA
TTTTATGCGTATGAATCGCCTGCCTGTTTGTACGTACGTATATCACCTGC
GCCGCTTGGCGCCCTTTTGACAACTCTCATTCCATGTATAATCCCCCTTT
GTTTTTGTTCGGACTCCCTGCATTTGCTCCCCTCCGTTCCTTGCCCTCTT
GCTTTTGCCTGTTATCTACCTTGTTTTCCCCTGCTCAACTTGTCTTCGTC
CTTTCCACTCTTTTCTCTCTTACTTTCTGCCTCTTTTTACCTCGTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_c06.b1 MSMg01no441_c06.b1 CHROMAT_FILE:
MSMg01no441_c06.b1 PHD_FILE: MSMg01no441_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:49 2005
         (410 letters)



>mm_chr16_11467456_11468265
          Length = 810

 Score =  785 bits (406), Expect = 0.0
 Identities = 409/410 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttataaggggaagcagagaagaagggatctccaattatttatgtcaaaatctgcaaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttataaggggaagcagagaagaagggatctccaattatttatgtcaaaatctgcaaaaat 551

                                                                       
Query: 61  aagaaatatttttatatctaattgtgtgtgacactttgctagaacattccctagtaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 aagaaatatttttatatctaattgtgtgtgacactttgctagaacattccctagtaagag 491

                                                                       
Query: 121 ctctcctggcagctcaagcttttagctggaggaaggaagccatggccaccaatcaaagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ctctcctggcagctcaagcttttagctggaggaaggaagccatggccaccaatcaaagct 431

                                                                       
Query: 181 gaggaggcaggaggacaagacggcaacagtcagacagctcgccttctgtctgtctctcgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gaggaggcaggaggacaagacggcaacagtcagacagctcgccttctgtctgtctctcgg 371

                                                                       
Query: 241 tcacactgcctgactacatgaaaccacattaaaacaattgcaaagccacatttaaacgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tcacactgcctgactacatgaaaccacattaaaacaattgcaaagccacatttaaacgtt 311

                                                                       
Query: 301 cattgtaaagactgagagcaaaatgcgacccgcaggaaggagccttgggactgctgcgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cattgtaaagactgagagcaaaatgcgacccgcaggaaggagccttgggactgctgcgct 251

                                                             
Query: 361 gccatagggtaggagactatgggaacagagagcgagcagagaggagctac 410
           |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 250 gccatagggtaggagactatggaaacagagagcgagcagagaggagctac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no441_c06.g1 MSMg01no441_c06.g1 CHROMAT_FILE:
MSMg01no441_c06.g1 PHD_FILE: MSMg01no441_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:49 2005
         (242 letters)



>mm_chr16_11282889_11283530
          Length = 642

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   caggagagaacagtggtaacagcccaaacttgccaaccttcctctttgctgatgtccaga 61
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 caggcgagaacagtggtaacagcccaaacttgccaaccttcctctttgctgatgtccaga 261

                                                                       
Query: 62  cttggtttctgctgacccttgtgtcttggcacagtgagtgggaacaatgccctcctgagc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cttggtttctgctgacccttgtgtcttggcacagtgagtgggaacaatgccctcctgagc 321

                                                                       
Query: 122 ctctggcagagatcagcaaactcattgttcccatggctaagcagagccaagaggcagatt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctctggcagagatcagcaaactcattgttcccatggctaagcagagccaagaggcagatt 381

                                                                       
Query: 182 gtagccttaggactgtggctcacagaggcaaagctaactttatactgtgcctgtgtatgt 241
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 382 gtagccttaggactgtggctcacagaggcaaagctaactttatgctgtgcctgtgtatgt 441

            
Query: 242 g 242
           |
Sbjct: 442 g 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)