BAC Information

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BAC

Clone NameMSMg01-441G05
Chromosome16 (Build37)
Map Location 89,068,164 - 89,068,679
singlet/doubletsinglet
Overlap genenone
Upstream geneGrik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik
Downstream geneLOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441G05.T7 (MSMg01no441_g05.b1)MSMg01-441G05.TJ (MSMg01no441_g05.g1)
ACCAG531281AG531282
length747754
length of high quality
(start - end)
513 (74 - 586)245 (81 - 325)
definitionCHROMAT_FILE: MSMg01no441_g05.b1 PHD_FILE: MSMg01no441_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:09 2005CHROMAT_FILE: MSMg01no441_g05.g1 PHD_FILE: MSMg01no441_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCTGTTATCACAACAGGGCTGCTTTATTATCCCAGGTTCTT
GACCTGGCCAATGAAACTGGGGAGACAAATGTTCATTTCTAAAGCAACAA
TGAAGAGCTATGATACTATCTCATACATGATGCTAACAATACCTCAGATG
TAAATAACACATGTTTTGGAGCACCCAAGTATTTCAAGAATGTATTAATT
AATTTTAGAAATAGGAAATAAGACAAGTTAGAAAATATGTTTACCTCTCC
TTGGAAGAAATCCTATTTTATTATTTCACAATTGATTAAAAATGATTTTT
TTTCCAGAAAGATTTTCCTCCCACAGGTAGTAGATTTCCTCCAAAGTACT
CATATTCTTTTTTTGGAAACTTTCTTCAAACTAAATTCTTACAATTGTTT
TGCATCCTTCCAGCTGTTGTCAATAGCAAGCATTTTAAAAATCTAATTAA
AATAATCACGTTGACTCTGAACTGATTCACAGTCTGTGCTAGGAGAGAAG
CAACACTCCTTGACTATGATGTGTTCCTTTTTTCCTGGAAGATGCCTGCC
TGTTTCATTGTAGTCCTCTGACCAGAGCTCATAACCCTTGCTTGGAATTA
TGTGCTCTCTGTTATAACCCACGGCAATTTGTGAACTTAATCCCCCCCCT
GCGGAATGATTATGGTATTAAAAAAACCCAACGTCCCTGTGGGGTTN
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACAGAGCAGGAACCTGGA
GGCAGGAGCTGACACTGACTATGGTTGAGTATTCCTTACAGGCTTGCTCA
TCTTGTATTCCTCAACACGAGTTCTTATATCATCCACGACCATGAGTTCA
AGTTGGCACTACTCTGAAAGGGCCAGGTACTCTCTCATCAATAACTAATT
AATAAAGTGTCCTACAAGCTTGCCTACTTCCCCATTTTAGGGTGTAAGTT
TCATAAGTATGATAAAGTGATTCTTTTCTATCTTAGGACTTTAGGTTGTG
TCAAATCTCCATTGTCCCATATCAACATGACAAACACTTTTAACCACAAA
CACTCCTTTCATATTTATTCTCCAGATCTCACAAAAAAAAACCCCACAAA
TAACCTTAAAATTTTCAGCGTTTTTAGAGATGCAAACACATTAAAAGTTC
AGTAGCTGCAATATATATACAACATTTTTAAAATTCAGATTCCTTTTGAC
AAGTTTAAAATATGTCAAGTGTGGGTCAGTATAATAATTACATTAATCTG
AATGCCTTTTTACTTTCTTTGTTCGACCCAGGGCACACTTATAAAACAAA
ATAACCCATCCCTTTGTGTTTATCACTTAACATACTAAGCCTAAAACTTC
CCTTTATTCTTTCCCGCCCCCCCAACTTTCCGATTTCCCTTCTTTTTTTT
ACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_g05.b1 MSMg01no441_g05.b1 CHROMAT_FILE:
MSMg01no441_g05.b1 PHD_FILE: MSMg01no441_g05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:09 2005
         (513 letters)



>mm_chr16_89067964_89068879
          Length = 916

 Score =  919 bits (475), Expect = 0.0
 Identities = 505/517 (97%), Gaps = 5/517 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggctgctttattatcccaggttcttgacctggccaatgaaactggggagacaaatgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggctgctttattatcccaggttcttgacctggccaatgaaactggggagacaaatgtt 260

                                                                       
Query: 61  catttctaaagcaacaatgaagagctatgat----actatctcatacatgatgctaacaa 116
           |||||||||||||||||||||||| ||||||    |||||||||||||||||||||||||
Sbjct: 261 catttctaaagcaacaatgaagagttatgatactgactatctcatacatgatgctaacaa 320

                                                                       
Query: 117 tacctcagatgtaaataacacatgttttggagcacccaagtatttcaagaatgtattaat 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacctcagatgtaaataacacatgttttggagcacccaagtatttcaagaatgtattaat 380

                                                                       
Query: 177 taattttagaaataggaaataagacaagttagaaaatatgtttacctctccttggaagaa 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taattttagaaataggaaataagacaagttagaaaatatgtttacctctccttggaagaa 440

                                                                       
Query: 237 atcctattttattatttcacaattgattaaaaatgattttttttccagaaagattttcct 296
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 441 atcctattttattatttcacaattgattaaaaatga-tttttttccagaaagatttttct 499

                                                                       
Query: 297 cccacaggtagtagatttcctccaaagtactcatattctttttttggaaactttcttcaa 356
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctcacaggtagtagatttcctccaaagtactcatattctttttttggaaactttcttcaa 559

                                                                       
Query: 357 actaaattcttacaattgttttgcatccttccagctgttgtcaatagcaagcattttaaa 416
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 actaaattcttgcaattgttttgcatccttccagctgttgtcaatagcaagcattttaaa 619

                                                                       
Query: 417 aatctaattaaaataatcacgttgactctgaactgattcacagtctgtgctaggagagaa 476
           ||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||
Sbjct: 620 aatctaattaaaataatcatgttgactctgaactgattcacactctgtactaggagagaa 679

                                                
Query: 477 gcaacactccttgactatgatgtgttccttttttcct 513
           |||||||||||||||||||||||||||||||||||||
Sbjct: 680 gcaacactccttgactatgatgtgttccttttttcct 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 916
Length adjustment: 10
Effective length of query: 503
Effective length of database: 906
Effective search space:   455718
Effective search space used:   455718
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)