BAC Information

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BAC

Clone NameMSMg01-442J03
Chromosome16 (Build37)
Map Location 69,637,986 - 69,811,097
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneSpeer2, EG664930, Gbe1, D16Ertd519e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442J03.T7 (MSMg01no442_j03.b1)MSMg01-442J03.TJ (MSMg01no442_j03.g1)
ACCAG532186AG532187
length806779
length of high quality
(start - end)
249 (73 - 321)351 (84 - 434)
definitionCHROMAT_FILE: MSMg01no442_j03.b1 PHD_FILE: MSMg01no442_j03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:47 2005CHROMAT_FILE: MSMg01no442_j03.g1 PHD_FILE: MSMg01no442_j03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,810,849 - 69,811,097)(69,637,986 - 69,638,336)
sequence
TTCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCAGAGAGGATCCGC
GGAATTCCTCCTTTTCCCTTTGTCACATTTTCAACTTCATCTATGAGTGA
TCAGGTCTCCTTTTTAGATTCTTTTTCAAACAGGTAACAAATAATTCTTT
CTTAGGTACATTTCCTGATGAATGCCCTCTTAGAAATGTCACAGGTATTT
CATTGACAGAAGTGCCATCCATATCTCAAAGATTACTGGTTTGTGTAACT
ACCTCTTGCTTCCTTATGTATATACATCATGTTCTAGTTCCATACAATTC
ATTTTTTTCTTCTTGTCATTGGATATATCCACAGTATAAATAGAATAATA
TAACTGCATCACCTGATAGTCTATGTTTTTTAAACTTACAAAAATTCTAC
TGTAACAAAGAGCTTGCATATTAATTCAATATGTAATATTCTCTGATTAA
CAAAGTTTTTAATACTCTCACTCCATTTTATTTATTAGTCCCCTTGCAAT
TGTACTACATGATTTTGTATAATCCCCCATTCATCTGTATTTGTCTTTTC
TACATTACTACCCTTGTTTTTTCCACATTTTTATTTTTCTTTTCTCCTTT
CTTTTTTCCCTTCCCGTGTTTATTTTCCCCACTTCCTTTCCTCTTTTCTT
CTTATTTTTCTCTCTCTCCACTTATTTTTTTACTCCCTCTCTTTCCCCTT
TTCCCTTTTTTCCTCCCTCCTTTTTTTTCTTCCCCTTTTTTCCCTTTTGT
TTATTATTTCTCCCCTCCTTCTTTTTTTTTTTTTTTCATTCCTTCTCCTT
CCCCTN
ATTCTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCTTCTGGTCAGACC
AATCATCAGGCCTCTAGAAAATGAACTGACATATTTGTGTGTTCTCTCCT
TGGATAGTGAATACTATCCAACAGTGAAACATATGAATATATCAAAATAT
GGAAAGATTACGGTACAAAATAAGTAGTGCTTAGAACCAAAAGGACTGAG
AGAAAAAGGTGGTTCAAAAATGTGTCTTTCTATGTTAATGCATAAAATCA
TTTTGAATGGTTCAAATTATAGAACCCATATTTAATAATCGTTCTCTTTC
TCCATAGTTCACTATTTAGTCTGTGTAAGACTTGGATTTGTGGTAGCTAA
TAGTAGCAGCCTGATGGCAGCCTGATGAAAGACTCAAAATATAAAAAGTG
AAAGAGCAATATTGCTTATAGGATATTACACAGGTATACATGTGTTTTCA
ATACTATGTATGTACTTTCCGCAGAATAACTGTACCCGACGGCACGTATT
TCTTTTTCTTTTCCTCTTTGGTTTTTCGCCATCTTGTTATTTCAACTCTG
CCTATCCTTTTATTGTTCTTTCTTTTCTTCTTTACTCCTTTTTGTTTCCT
TTTTATCTTCCTTTTTCTTACTATCCTTACTTCCCTTTCTCTTTATTTTT
TATCTTTCCCATCTTCCCCCCCCCCCCTCTCCTTTTTCTTTTCCTTTTCT
TTTTCCCTCCCTTCCTCCCTCCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_j03.b1 MSMg01no442_j03.b1 CHROMAT_FILE:
MSMg01no442_j03.b1 PHD_FILE: MSMg01no442_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:47 2005
         (249 letters)



>mm_chr16_69810649_69811297
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacattttcaacttcatctatgagtgatcaggtctcctttttagattctttttcaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tcacattttcaacttcatctatgagtgatcaggtctcctttttagattctttttcaaaca 390

                                                                       
Query: 61  ggtaacaaataattctttcttaggtacatttcctgatgaatgccctcttagaaatgtcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ggtaacaaataattctttcttaggtacatttcctgatgaatgccctcttagaaatgtcac 330

                                                                       
Query: 121 aggtatttcattgacagaagtgccatccatatctcaaagattactggtttgtgtaactac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aggtatttcattgacagaagtgccatccatatctcaaagattactggtttgtgtaactac 270

                                                                       
Query: 181 ctcttgcttccttatgtatatacatcatgttctagttccatacaattcatttttttcttc 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 269 ctcttgcttccttatgtatatacatcatgttctagtcccatacaattcattttttccttc 210

                    
Query: 241 ttgtcattg 249
           |||||||||
Sbjct: 209 ttgtcattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no442_j03.g1 MSMg01no442_j03.g1 CHROMAT_FILE:
MSMg01no442_j03.g1 PHD_FILE: MSMg01no442_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:47 2005
         (351 letters)



>mm_chr16_69637786_69638536
          Length = 751

 Score =  648 bits (335), Expect = 0.0
 Identities = 347/351 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcttctggtcagaccaatcatcaggcctctagaaaatgaactgacatatttgtgtgtt 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcttctggtcagaccaaccatcaggcctctagaaaatgaactgacatatttgtgtgtt 260

                                                                       
Query: 61  ctctccttggatagtgaatactatccaacagtgaaacatatgaatatatcaaaatatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctccttggatagtgaatactatccaacagtgaaacatatgaatatatcaaaatatgga 320

                                                                       
Query: 121 aagattacggtacaaaataagtagtgcttagaaccaaaaggactgagagaaaaaggtggt 180
           ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 aagattaaggtacaaaataagtagtgcttagaaccaaaaggattgagagaaaaaggtggt 380

                                                                       
Query: 181 tcaaaaatgtgtctttctatgttaatgcataaaatcattttgaatggttcaaattataga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaaaatgtgtctttctatgttaatgcataaaatcattttgaatggttcaaattataga 440

                                                                       
Query: 241 acccatatttaataatcgttctctttctccatagttcactatttagtctgtgtaagactt 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acccaaatttaataatcgttctctttctccatagttcactatttagtctgtgtaagactt 500

                                                              
Query: 301 ggatttgtggtagctaatagtagcagcctgatggcagcctgatgaaagact 351
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggatttgtggtagctaatagtagcagcctgatggcagcctgatgaaagact 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)