BAC Information

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BAC

Clone NameMSMg01-443J06
Chromosome16 (Build37)
Map Location 13,459,785 - 13,459,999
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622509, LOC622553, Ercc4, Gt4-1, Mkl2
Downstream geneParn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik, Nde1, Myh11, 0610037P05Rik, Abcc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443J06.T7 (MSMg01no443_j06.b1)MSMg01-443J06.TJ (MSMg01no443_j06.g1)
ACCAG532951AG532952
length749745
length of high quality
(start - end)
39 (83 - 121)215 (81 - 295)
definitionCHROMAT_FILE: MSMg01no443_j06.b1 PHD_FILE: MSMg01no443_j06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:13 2005CHROMAT_FILE: MSMg01no443_j06.g1 PHD_FILE: MSMg01no443_j06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGACCTCAATATTTGCGTGCGCTATACGAATACTATAATACGNAAACGC
GCGGAATTCTACTGATATACCGATAATAGCTAACCCTGAGACATCTATGA
TAATTTCACAAGATAGTGTGGTTTGCCTCAATGAAAGAATGTGTGCTTTC
AAAGTGTGGTGGTGTATACTTTTAATCCTAACACCCTGTGGGCTAAGACA
ATCAAAAAAATCCCTGCTTTGCTTTGGTTCCTTGGTTGTCGTTCCCAGGA
GCTTCCCACCTTGGGTTTTGAGACCCAGCGTCTACCTGGAGCTCGCTGGT
TAGGTTAGACTGGTCAGGCAGAGTTTTTTTTTTACAGATCCCTCCTTGTT
TCCCCTCCCTGTCACTGTTATTTGCAACGTTCCCCCACATCTACCTGCCT
TAATGCCGACCCTGCTACCCAGACTCATGCCTTGTCCCTGTCGTCAACTG
TCTTACCCACTGACCTATTTCCCTAGCCACTATTCTGACTAATTCTCTAT
TGATGCCTTTTTGTCCCGCTCTGCCTTTGTATGCTCCCTCACATTTTCCC
CTTGTTCCTCCCCCCTTACTTCTTTTCCTAACCGCAATATTTTCTACCAT
TCCTTTCTTTTTTTTTTTTTTTACCCTTTCTCCCCCAACCTTTTCTCCCC
TCCCCCCCCCTTCTTTCATTCTTTTTATTTACCCCCAACTTATCTTACTT
CCCCTCCCCTCCCCCTTATATCTTCTTCTCCATCTTTCTTCCTCCCCCC
TCTTCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGACATCATGCTTGTAAGG
TATAATCTTTACTGACAGCCACCTCTCCATCTCTAACATCTTAACATTTT
CTTTTGTCTCAGACTTTCAGTAGGTGGAATGCGGAGAGAGTCAGAAGAGC
TGAACAGAATCTGGAGCCTGCTCCAAGGCAGCCTTGGTGAGGAGAGAGCC
CTGGGTGAAGCTAAACCAGCTGTGTAGCTCACAGGATTCGGGATGAGACC
AGTACTTTTTCAACCAGGCAGTGGTGTTTTTCTTCTTTAATCCCAACACT
AGGGAGGCAGAGGCAGATAGATTTCTGAGTTTGAGGCCAGCCTGGCGCAC
AGAGTGAATCCCAGGACTACCAGGGCTACTTATAGAAACCCTGCCTTACA
TATCTTATTTCCCATTCCCGCCCATTCATACATAATAAGAGCCCCTTCTT
TTTTGGTGCCCCCCGACTTGTTATTTCCTATCCCGTTCCATCCCCGCGCC
TCCGCCCTTTTTGTCTCCCTAACCCATTTTTTTTTCTTTTTTCCTCTATT
CCCCCCCCCCCCTTTCTTCTTCACACTTAAATTTTCCGCCCCTGTTTCTT
TCCCCGTTGATCCCTTTTCCTCGGCACCCTTCCCCGCGCACTATTTATCC
CTTTTATATTTCCCCCCCCTTATTTCCCCGCTTTATTATTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_j06.g1 MSMg01no443_j06.g1 CHROMAT_FILE:
MSMg01no443_j06.g1 PHD_FILE: MSMg01no443_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:13 2005
         (215 letters)



>mm_chr16_13459585_13460199
          Length = 615

 Score =  393 bits (203), Expect = e-114
 Identities = 212/215 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggacatcatgcttgtaaggtataatctttactgacagccacctctccatctctaacatc 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggacatcatgcttgtaaggcataatctttactgacagccacctctccatctctaacatc 260

                                                                       
Query: 61  ttaacattttcttttgtctcagactttcagtaggtggaatgcggagagagtcagaagagc 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ttaacattttcttttgtctcagactttcagtaggtggaatgtggagagagtcagaagagc 320

                                                                       
Query: 121 tgaacagaatctggagcctgctccaaggcagccttggtgaggagagagccctgggtgaag 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tgaacagaatctggagcctgctccaatgcagccttggtgaggagagagccctgggtgaag 380

                                              
Query: 181 ctaaaccagctgtgtagctcacaggattcgggatg 215
           |||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaaaccagctgtgtagctcacaggattcgggatg 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space:   124836
Effective search space used:   124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)