BAC Information

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BAC

Clone NameMSMg01-444L01
Chromosome16 (Build37)
Map Location 96,449,560 - 96,450,078
singlet/doubletsinglet
Overlap geneSh3bgr
Upstream geneKcnj15, Erg, Ets2, LOC625548, LOC100040997, Dscr2, Brwd1, LOC100041318, Hmgn1, Wrb, 4921526F01Rik
Downstream geneB3galt5, Jam4, Itgb2l, Pcp4, Dscam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444L01.T7 (MSMg01no444_l01.b1)MSMg01-444L01.TJ (MSMg01no444_l01.g1)
ACCAG533797AG533798
length767726
length of high quality
(start - end)
463 (72 - 534)519 (74 - 592)
definitionCHROMAT_FILE: MSMg01no444_l01.b1 PHD_FILE: MSMg01no444_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:40 2005CHROMAT_FILE: MSMg01no444_l01.g1 PHD_FILE: MSMg01no444_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATACGCGGAATTC
ACTAGAATCTTTCCTTAGATCACAGTTTCCTCCATGATGAAAACCTGCCA
TTTTAGAAGGAAACTTCTTGAGACAGGATGTTGACCAGAGGGTGAAACAC
TCAATCTGGCAGTGAAACTTTTAAGACAGGAAGTTAACAACTCAGAATAG
TTCCAAGGAGTCCCTGAAATTGATCAGATTCACCAGGTCCTCCTTCCCAT
GAGTATACAAGCGGTAGAGACTGCTAAGAGTTACTCTCAGAAAAGCTGAG
CTGCCTGCAAGAGGCTCATATTTTCCCAACAACCTGGAAAGGGCACTTTG
TAGCCTCTTGAGCTGTCTGTGGGTGATGCAGTGAGTCTCAAGTTTTCAGA
TCTTGTGAGCCATCACCCACGCTGAGGTAGGCTTTTGTGACGTGGCTGTC
CCAGAGTGATTTCTGCTCCTGTAAGTAATCCTTCCCCCATATTTCTGTAA
GTAGCCCCAATAAAACTCATTGGTCCCCCAAGTTGGATTGTGGCGCCATC
CATACCCCGGTCAGTTGTATTTTCACCACCCATGGTGAATAGACCCTTAA
TTATTCTTCACAGGAATAGTCTTTGACCCACTTTTTTACCCCCCCTTCCT
CCCCTTTTTTTTTCCCTATTTTTTACTTGGGCAGGGCCCTGTGTAGCCCC
CTTTAGCACATTTGGTGCTTTCCCCTCCGGTTTTTTAAACACACATGTTT
CTCTCTTTCCGCCCTTG
NNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTACCAGCAAAATTCCTCCTCCTGAGGCTGGACAGATG
GCTCAGTGGTTAAGAGTACTTGCTGCTCTTACCAAGCATTCAAATTTGGT
TCCTAGCACCTAAATTGCCTGGGACTCAAGCTCCAAGGGATCCCATGCCT
TCCTGTGGCATCCATGGGCACCCTCATATACACATGATGCACACACACGC
GTACATATGTGTATAAACATACATATTAATAAACAAATAAATAACACTCC
TTCCCAATGCACATGACTTTATATTGCTTTCTAGTGGAGACTTGCACTGT
TGAAATTACCCATCAGGAACTTGGCTGAAGATGCAACCGCTCTGCCTTCC
ACTAACAAATGGTTGGGAAGCCATAGAGAGCTTTCCTTTCTTCTGGTGTT
TGGTATATGTTAGGTCTGATAACCAGTACACACCTGGCTCCATTCTCATG
ATGGAGATTTATTTTCTCTTCTTTACTTGCAGCCACAAATGGTAAAATGT
GGCCCTGCCTTCCTGGTTTGTGGGTTGGATAGTGAAGATCACAGTGATCA
TTCTGTCTTCAACAGTCTTCTCACAATATTTCCTTCCTTCTAGAATATCC
GAGCCACGAGGCTACATTTGAACTCTCCCTTCTCTATTAACGCAACGAAA
CACTTGGTTGGAAGCCCGGACCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_l01.g1 MSMg01no444_l01.g1 CHROMAT_FILE:
MSMg01no444_l01.g1 PHD_FILE: MSMg01no444_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:40 2005
         (519 letters)



>mm_chr16_96449360_96450278
          Length = 919

 Score =  965 bits (499), Expect = 0.0
 Identities = 515/521 (98%), Gaps = 4/521 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcctcctcctgaggctggacagatggctcagtggttaagagtacttgctgctcttacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcctcctcctgaggctggacagatggctcagtggttaagagtacttgctgctcttacc 260

                                                                       
Query: 61  aagcattcaaatttggttcctagcacctaaattgcctgggactcaagctccaagggatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcattcaaatttggttcctagcacctaaattgcctgggactcaagctccaagggatcc 320

                                                                       
Query: 121 catgccttcctgtggcatccatgggcaccctcatatacacatgatgcacacacacgcgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgccttcctgtggcatccatgggcaccctcatatacacatgatgcacacacacgcgta 380

                                                                       
Query: 181 catatgtgtataaacatacatattaataaacaaataaataacactccttcccaatgcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catatgtgtataaacatacatattaataaacaaataaataacactccttcccaatgcaca 440

                                                                       
Query: 241 tgactttatat--tgctttctagtggagacttgcactgttgaaattacccatcaggaact 298
           |||||  | ||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgactc-a-atcctgctttctagtggagacttgcactgttgaaattacccatcaggaact 498

                                                                       
Query: 299 tggctgaagatgcaaccgctctgccttccactaacaaatggttgggaagccatagagagc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tggctgaagatgcaaccgctctgccttccactaacaaatggttgggaagccatagagagc 558

                                                                       
Query: 359 tttcctttcttctggtgtttggtatatgttaggtctgataaccagtacacacctggctcc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tttcctttcttctggtgtttggtatatgttaggtctgataaccagtacacacctggctcc 618

                                                                       
Query: 419 attctcatgatggagatttattttctcttctttacttgcagccacaaatggtaaaatgtg 478
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gttctcatgatggagatttattttctcttctttacttgcagccacaaatggtaaaatgtg 678

                                                    
Query: 479 gccctgccttcctggtttgtgggttggatagtgaagatcac 519
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gccctgccttcctggtttgtgggttggatagtgaagatcac 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)