BAC Information

Click to search

BAC

Clone NameMSMg01-445B05
Chromosome16 (Build37)
Map Location 91,267,282 - 91,267,814
singlet/doubletsinglet
Overlap genenone
Upstream geneSfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2
Downstream geneOlig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445B05.T7 (MSMg01no445_b05.b1)MSMg01-445B05.TJ (MSMg01no445_b05.g1)
ACCAG534092AG534093
length748767
length of high quality
(start - end)
559 (34 - 592)388 (67 - 454)
definitionCHROMAT_FILE: MSMg01no445_b05.b1 PHD_FILE: MSMg01no445_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:10 2005CHROMAT_FILE: MSMg01no445_b05.g1 PHD_FILE: MSMg01no445_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTCTAT
TTCTTCAGAGTCACTTTGCTTCCCGTCTGGTATGATTTTGTTTTTCAACC
CAGGTTTTTCTTCCAGCCACCTCCTCTCTTCCCAAGTGGGCTCCTATTGC
CAGAGTCCTCTCTGTAAAGCTGCCCACACTCTTGAGTGAGCACCTTTGGG
CGTTTGCATATTTCAGTGAGGAACTTGTTGTTATTGTGAGCTAGCGGTGA
TTTCAAACCCACCTTCGCATCTCTTAGACACACAGAAGACACCAAAGCAT
GATACTGCTCTTCAGACGGATGTAGAGACAAACAGGTGCTCTGGAAACCA
TCCTGCCTGGACAAGATAATTTCTACACATAAGACAATCCAGGCTGGAGC
AATACTGCCAGTGTTTGGTCAAGTATGTTGACAGAGGAGAGCTGGGGAGT
ATCCCAGGCAAAGAGGAAAGCTGTGTTGAATCTGCACCAATGCAGGATGT
TACAAGTTCACTTGGAAGTTGGAGGACCGATGTTGGTGAAAGAACATGGC
CGTCTTGAAGTCAGCAAGTGTGTTCATAGCAAACGGCAGTTCTTACGGCA
GGCACTCCTTCTTGTCTTCCATAAAAAGTATCCAGGGCGAAATGCATCTT
TCTGCTAAGAACTAGATTTGACCCTTCTGCCGGGGGAGGAGGAACCCCAT
CTGCTGTTCTGCAGGAAACAACAATCCCCTGTTGTGCCCCTGTAAACA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAATGGGTG
TTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGT
TTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCAT
ATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATG
GATGATTTCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTAA
GGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATC
TTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATA
AAATGAGTTGGGTAGAGTACCTTCTACTTCTATCTTGTGAAATAGTTTGT
GCAGAACTGGAATTACATCTTCTTTGAAGGTCTGATTGAACTCTGCACTA
AACCCATCTGGTCCTGAGCTTATTTTGGTTGTGAGACTATTAATAACTGG
CTTCCATTTCTTTAACCGATATGTTAATTGTTTATTACGTTCACCTCTGC
CCCTGTTCTATATTTTTTGAATTAGCGCTTCACGTCCTAAATTCTCCTCA
TTTATTTCTGCTCTCCTACCATTTATTCTTACTCAACCCTTCTCTTATAT
CTGCCTCATAATTTCCTCTGCTTCTGTTTACTACTCCCTCTCTCACTTTG
ACCATTCCGTTATTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_b05.b1 MSMg01no445_b05.b1 CHROMAT_FILE:
MSMg01no445_b05.b1 PHD_FILE: MSMg01no445_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:10 2005
         (559 letters)



>mm_chr16_91267076_91268034
          Length = 959

 Score =  903 bits (467), Expect = 0.0
 Identities = 522/553 (94%), Gaps = 20/553 (3%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctctatttcttcagagtcactttgcttcccgtctggtatgattttgtttttcaac 66
           ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 207 gaattctctatttcttcagtgtcactttgcttcccgtctggtacgattttgtttttcaac 266

                                                                       
Query: 67  ccaggtttttcttccagccacctcctctcttcccaagtgggctcctattgccagagtcct 126
           |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 267 ccagctttttcttccagccaccccctctcttcccaagtgggctcctattgccagagtcct 326

                                                                       
Query: 127 ctctgtaaagctgcccacactcttgagtgagcacctttgggcgtttgcatatttcagtga 186
           |||                    |||||||||||||| ||||||||||||||||||||||
Sbjct: 327 ctc--------------------tgagtgagcaccttcgggcgtttgcatatttcagtga 366

                                                                       
Query: 187 ggaacttgttgttattgtgagctagcggtgatttcaaacccaccttcgcatctcttagac 246
           ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 367 ggagcttgttgttattgtgagctagcagtgatttcaaacccaccttcgcatctcttagac 426

                                                                       
Query: 247 acacagaagacaccaaagcatgatactgctcttcagacggatgtagagacaaacaggtgc 306
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 acacaggagacaccaaagcatgatactgctcttcagacggatgtagagacaaacaggtgc 486

                                                                       
Query: 307 tctggaaaccatcctgcctggacaagataatttctacacataagacaatccaggctggag 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tctggaaaccatcctgcctggacaagataatttctacacataagacaatccaggctggag 546

                                                                       
Query: 367 caatactgccagtgtttggtcaagtatgttgacagaggagagctggggagtatcccaggc 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 caatactgccagtgtttggtcaagtatgttgacagaggagagctggggagtatcccaggc 606

                                                                       
Query: 427 aaagaggaaagctgtgttgaatctgcaccaatgcaggatgttacaagttcacttggaagt 486
           |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||
Sbjct: 607 aaagaggaaagctgtgttgagtctgcaccaacgcaggatgttacaagttcacttggaggt 666

                                                                       
Query: 487 tggaggaccgatgttggtgaaagaacatggccgtcttgaagtcagcaagtgtgttcatag 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tggaggaccgatgttggtgaaagaacatggccgtcttgaagtcagcaagtgtgttcatag 726

                        
Query: 547 caaacggcagttc 559
           |||||||||||||
Sbjct: 727 caaacggcagttc 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)