BAC Information

Click to search

BAC

Clone NameMSMg01-446K07
Chromosome16 (Build37)
Map Location 92,090,438 - 92,274,730
singlet/doubletdoublet
Overlap geneMrps6
Upstream geneH3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Slc5a3
Downstream geneKcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1, EG666023
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446K07.T7 (MSMg01no446_k07.b1)MSMg01-446K07.TJ (MSMg01no446_k07.g1)
ACCAG535289AG535290
length733728
length of high quality
(start - end)
197 (148 - 344)249 (65 - 313)
definitionCHROMAT_FILE: MSMg01no446_k07.b1 PHD_FILE: MSMg01no446_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:14 2005CHROMAT_FILE: MSMg01no446_k07.g1 PHD_FILE: MSMg01no446_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,090,438 - 92,090,593)(92,274,482 - 92,274,730)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXAATGCCGAAGGTGCGCGGAANNCNN
CCCTGATAGCCNGATGGCCACCAANAGCANAGCGGGCGGNAACAANTCCA
CNTANANAGGACTATGCCCACAAGAAGNNNCAAAGGNCCTACCNANCAAA
CCANTTTATTATGATACTTGACCTACTTAGTACACAAAACTGCAGAGATG
TAGTATGGTGAGTGAGTACTGTTTTTCACTAGATCCTACAAATTGTTTTT
TTATACTAATTTCCCCTTGGCCAGGTTCCCGTGATCCCATTTTTGTCAAC
CGACAGNCCTTATTTTTTTTTTTTCNGCNCAAGGCACCACANNNAGNANA
NAGCAGTGTGCTACCACCCACCCCGAGGCCAACAGCATCACAACTCCCAT
ATGTATCTGGAGCCTCATTGTTGCCTGCACACTATGTCATTATCATACTT
AGGTTCCTTTTGTTTTTTAAACAGTAATACCATCTATGAAACCATACATG
TACAAAAAGCAGGCAGCAACAAAGAGCCCCACATAATTGTGGCACCAAGC
ACACTGCATGGTGCACCCTCTGTCTATGGAAGGCAGCCACTGAGCGTGCG
GCATGCGAATGCGCGCCGCACCCGATTGACCTCCCCTTTTTACCCCCTTG
TTTTTTTTTTTTTTTGCACATGTCTCTAATCCCCGCATTTACACCGCTCT
TGCGGACCTCTTATGCTGTCTTCACCCACATTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XGATTCCGAAATTCTGCTGAGCCTGGAATGAACCCATCTACAAACAAGCG
AGTCTGTCTGTGCAGGAGCTGGAAGGAATGGGGTGTGGAGAAGGCCTCGG
GGTAGTGTGTGCCATCAATTACTTGTGGCTCGCAGAGAGCCGAGGACGCT
TGGACGTACAACTCCTGAGCATCTGGAGAAGTCTTTGGACAGCATCTCAA
GTCCTCCGGATGAATCAAGGTCATTCAGACCAACCAAGCCTAGCCAGATG
GAGGCTGGAGTGTTTTTTTGTGCAAATGGCTTGTGGCTCATCTCAGCTAT
CCTGTCTCTTGCCTGTCTTCTCGGTAGTCCATTCCTTCCATCCATCATAC
ACCAGTTTAGGGTCTATCCTCCCCTGCTAGATACACTGCAGTATAGGATC
CAACCCAACTCTCTTCATTGATGGCTGCAGAGATGGCTCATTGGACCATA
TGCTTGTCATGCAAGCTTGAGGACCAGAGCTTGAGACCCTTATAAATCAC
AACACTATAGTGCGTTTTCCTCATTTTTGTGCTAGGGAGATTTTTTGCCT
TTCTGGGCTCTTCCCGTATCCCGCCTAGTTTACCTGTTGTGCCCCACTCT
CCTTTTTTTTTCCTTGCACTTCCCTTACGCGTTTTTTTTCGTTTCTTCTC
CCCTTCTTCTCGCTTTTTTTTCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_k07.b1 MSMg01no446_k07.b1 CHROMAT_FILE:
MSMg01no446_k07.b1 PHD_FILE: MSMg01no446_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:14 2005
         (197 letters)



>mm_chr16_92090238_92090834
          Length = 597

 Score =  257 bits (133), Expect = 3e-73
 Identities = 150/156 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaccantttattatgatacttgacctacttagtacacaaaactgcagagatgtagtatg 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaccattttattatgatacttgacctacttagtacacaaaactgcagagatgtagtatg 260

                                                                       
Query: 61  gtgagtgagtactgtttttcactagatcctacaaattgtttttttatactaatttcccct 120
           |||||||||||| |||||||||||||||||||||||||||  |  |||||||||||||||
Sbjct: 261 gtgagtgagtaccgtttttcactagatcctacaaattgttggtaaatactaatttcccct 320

                                               
Query: 121 tggccaggttcccgtgatcccatttttgtcaaccga 156
           ||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggccaggttcccgtgatcccatttttgtcaaccga 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no446_k07.g1 MSMg01no446_k07.g1 CHROMAT_FILE:
MSMg01no446_k07.g1 PHD_FILE: MSMg01no446_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:14 2005
         (249 letters)



>mm_chr16_92274282_92274930
          Length = 649

 Score =  451 bits (233), Expect = e-131
 Identities = 245/249 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctgagcctggaatgaacccatctacaaacaagcgagtctgtctgtgcaggagctggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tgctgagcctggaatgaacccatctacaaacaagcgagtctgtctgtgcaggagctggaa 390

                                                                       
Query: 61  ggaatggggtgtggagaaggcctcggggtagtgtgtgccatcaattacttgtggctcgca 120
           ||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 389 ggaatggggcgtggagaaggccgaggggtagtgtgtgccatcaattacttgtggctcgca 330

                                                                       
Query: 121 gagagccgaggacgcttggacgtacaactcctgagcatctggagaagtctttggacagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gagagccgaggacgcttggacgtacaactcctgagcatctggagaagtctttggacagca 270

                                                                       
Query: 181 tctcaagtcctccggatgaatcaaggtcattcagaccaaccaagcctagccagatggagg 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 269 tctcaagtcctccggatgaatcaaggtcattcagaccaaccaagcccagccagatggagg 210

                    
Query: 241 ctggagtgt 249
           |||||||||
Sbjct: 209 ctggagtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)