NNNGGATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAATAATATGTCCAAAATCTCTTATTACAATAATAAGGAA
GGTCTTGTGCCCATGTGGGATTCCAGTGTCCAACCCCACTGCATTCCCAT
AAAAAGCTGAGGAAAGTTGGTTTAAGCTCATCCCATCCCTTCACCTTGAG
CTAACCCTGCCTGTACTGTCTCCTTTAGGAATCTGAAAGCCCACACTTGG
CATTGCCTGTTTTTCAGAGCAGAATCTCTTATACTGAATCCAGAGAGAAC
TTTATAGCCTACGCAGTGTGGGGGTCACAGACAGACAACACCCTCACAGG
TCCCTCTGGGAGAGGCAGGGGATGAGAGGGGATGTGATAGAGTCCTGCGG
GTACTTCTGTCTCTGTTAAACCTGAGTTTGGCAACTTTAAAAACTCTTCT
TGGTTCTAAAACTGGGTCCTTGGGGAACAGGCAGTCAGTCAAGCAGCAGC
CCCCAAAGCTGGGGGAGGTTAAGGCAGGTGAGAACATACTCCATCTTGCC
TAAAGTTAGAAAGAAAAAAGAAGAAATATTGGGGGTGGGTAATTTATTTA
ATAGGAGGCAGGGGTGCCGCACTGCCTGTTTAGGAGCCAAGTCTTGTCCT
GAATATTTTCCAGGAAAAAAGCCTTCTGAATCAGGGTGAGGCCCAGAAGA
ACGGTTGAATAAATTATTATTAAGGN

AAAAACCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGAGGCTCTATATCC
AGCCATACTGGCTGTCTTAGGACCGCTATGGCTGTGATTGAACACAATGA
TCAGAAGCAACTTGAAGAGCAAATTATTCATTGGGTTTATATATCCTGAC
TCACAGTCCATTAAGGGAAGCAAAGACTGGAACTCAAACCAGGCAGGAAT
CTGAAGGCAAGAACTGATGTGGAGACCATGGAGGGGTGATGCTTACTGGC
TTGCTCCTCATTGGTTTGCTTAGTAGGCCTGCCTGCTTTCTCAAAGAACT
CAGGATCACAAGTCTAGGGATGGCACCACCCTCAATGGGCTGGGTCTTCC
CCCATCACTTGCTAATTAACCTAATCACAGCTACAGCTTGCCTACAGTTT
GTTCTTAAGGAGATAGTTTTCCAACAGCAGTTCCCTCTTCTCAGATGACT
TTAGCTTGTGTCAAGTTGAAATAAAACTAGCCAGCCTACTGACCAAATGA
GAAAGCTGCAGGCTAGTGAGAATTCTCTGCCCTCAAAACCAAATAAGGCA
GACTGCTCCCAAGGACCAACCTCAGAAGGTGACCTCTTGCCACATGTTCA
CCCTCCCACTCTCTCCTCCCTGTCTTCCCCACTTCTCCTCTTTTAATACC
TACTTTGGTACTCTCAATTTCTCTCCTTTTTTCAT

Query= MSMg01no447_e04.b1 MSMg01no447_e04.b1 CHROMAT_FILE:
MSMg01no447_e04.b1 PHD_FILE: MSMg01no447_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:05 2005
         (562 letters)



>mm_chr16_5686715_5687676
          Length = 962

 Score = 1065 bits (551), Expect = 0.0
 Identities = 557/559 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaataatatgtccaaaatctcttattacaataataaggaaggtcttgtgcccat 63
           |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaataaaatgtcaaaaatctcttattacaataataaggaaggtcttgtgcccat 263

                                                                       
Query: 64  gtgggattccagtgtccaaccccactgcattcccataaaaagctgaggaaagttggttta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgggattccagtgtccaaccccactgcattcccataaaaagctgaggaaagttggttta 323

                                                                       
Query: 124 agctcatcccatcccttcaccttgagctaaccctgcctgtactgtctcctttaggaatct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agctcatcccatcccttcaccttgagctaaccctgcctgtactgtctcctttaggaatct 383

                                                                       
Query: 184 gaaagcccacacttggcattgcctgtttttcagagcagaatctcttatactgaatccaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaaagcccacacttggcattgcctgtttttcagagcagaatctcttatactgaatccaga 443

                                                                       
Query: 244 gagaactttatagcctacgcagtgtgggggtcacagacagacaacaccctcacaggtccc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gagaactttatagcctacgcagtgtgggggtcacagacagacaacaccctcacaggtccc 503

                                                                       
Query: 304 tctgggagaggcaggggatgagaggggatgtgatagagtcctgcgggtacttctgtctct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctgggagaggcaggggatgagaggggatgtgatagagtcctgcgggtacttctgtctct 563

                                                                       
Query: 364 gttaaacctgagtttggcaactttaaaaactcttcttggttctaaaactgggtccttggg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gttaaacctgagtttggcaactttaaaaactcttcttggttctaaaactgggtccttggg 623

                                                                       
Query: 424 gaacaggcagtcagtcaagcagcagcccccaaagctgggggaggttaaggcaggtgagaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaacaggcagtcagtcaagcagcagcccccaaagctgggggaggttaaggcaggtgagaa 683

                                                                       
Query: 484 catactccatcttgcctaaagttagaaagaaaaaagaagaaatattgggggtgggtaatt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 catactccatcttgcctaaagttagaaagaaaaaagaagaaatattgggggtgggtaatt 743

                              
Query: 544 tatttaataggaggcaggg 562
           |||||||||||||||||||
Sbjct: 744 tatttaataggaggcaggg 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)