Query= MSMg01no448_f13.b1 MSMg01no448_f13.b1 CHROMAT_FILE:
MSMg01no448_f13.b1 PHD_FILE: MSMg01no448_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:36 2005
(553 letters)
>mm_chr16_52757392_52758344
Length = 953
Score = 849 bits (439), Expect = 0.0
Identities = 504/533 (94%), Gaps = 16/533 (3%)
Strand = Plus / Minus
Query: 1 ggaatttggaatcaagacagtcacacttctgaacatgattctctgtgtctggactcaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ggaatttggaatcaagacagtcacacttctgaacatgattctctgtgtctggactcaaag 666
Query: 61 ccaccgaatagcgttgcacatggcctgacaagacagcaggacaagtcatagcacagtgcc 120
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ccaccaaatagtgttgcacatggcctgacaagacagcaggacaagtcatagcacagt--- 609
Query: 121 tcactctgagctgaaactcctgctttttgtttgggatgaagacatttttctgtcagataa 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 608 tcactctgagctgaaactcctgctttttgtttggaatgaagacatttttctgtcagataa 549
Query: 181 cttcttctgggaatgacctgttttaat----aataaaaacatgtttgcatataaagtagt 236
||||||||||||||| ||||| ||||| || ||||| ||||||| || |||||||||
Sbjct: 548 cttcttctgggaatggcctgtcttaataaagaaaaaaaaaatgtttggatttaaagtagt 489
Query: 237 accaccttccttg----attttatcatagtttttataacagtatagtgaaaaatccagtt 292
||||||||||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct: 488 accaccttccttgaacaa----atcatagtttttataacagtatagtg-aaaatccagtt 434
Query: 293 ttaatgagaaacatcatttttatacctcagtgagaaggcaggttagcttaagataaaccc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttaatgagaaacatcatttttatacctcagtgagaaggcaggttagcttaagataaaccc 374
Query: 353 aactattaccatttaagaaaacacgtctaggagcagctgcttcttaattgcctatcttct 412
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 373 aactattaccatttaagaaaacacatcttggagcagctgcttcttaattgcctatcttct 314
Query: 413 tcaaggctactctgtaatggcagcctgactatctcctttgtatgtgtgagaaggaacaga 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tcaaggctactctgtaatggcagcctgactatctcctttgtatgtgtgagaaggaacaga 254
Query: 473 cagaccaacactatcattccccgacagcgcaggaaagaagcagctcaatttct 525
||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 253 cagaccaacactatcattccctgtcagcgcaggaaagaagcagctcaatttct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no448_f13.g1 MSMg01no448_f13.g1 CHROMAT_FILE:
MSMg01no448_f13.g1 PHD_FILE: MSMg01no448_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:36 2005
(505 letters)
>mm_chr16_52642614_52643517
Length = 904
Score = 899 bits (465), Expect = 0.0
Identities = 495/505 (98%), Gaps = 2/505 (0%)
Strand = Plus / Plus
Query: 1 gaggttgaaagtcaccatctgttgcctgcaagttggagacctaagacctaggaaagtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaggttgaaagtcaccatctgttgcctgcaagttggagacctaagacctaggaaagtgtt 261
Query: 61 gcagtatgatgactcatctcaagcagtgagaagataaaaaaacccaccatttgttgtatt 120
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 262 gcagtatgatgactcatttcaagcagtgagaagataaaaaa-cccaccatttgttgtatt 320
Query: 121 gaggtcatcgaagggtgggctgatgactacccttgttagtgagggaaattcagtctatca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggtcatcgaagggtgggctgatgactacccttgttagtgagggaaattcagtctatca 380
Query: 181 atcagtgcactgaaccatcagctttactgggaaagaccagtacaaaataagcaggtattt 240
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 381 atcagtgcactgaaccatcagctttactgggaaagaccagtacaaa-taagcagaaataa 439
Query: 241 atcgaatttgacagctcatatagacacataaaatgaatcatcatgtatctttaattgtgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atcgaatttgacagctcatatagacacataaaatgaatcatcatgtatctttaattgtgc 499
Query: 301 taactttgctttccacggagaaggtatataatacctctaaaagtgagagctaaggaaatc 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 500 taactttgctttccacggagaaggtgtataatacctctaaaagtgagagctaaggaaatc 559
Query: 361 tttgaaaattgtctatgttgaagagatatgcattaaagcaagaaatcaatgacccctctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttgaaaattgtctatgttgaagagatatgcattaaagcaagaaatcaatgacccctctg 619
Query: 421 ttttggctggcattgtgtacttcaaaatgtcccattatatattggactctgtctctgttc 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 620 ttttggctggcattgtgtacttcaaaatgtcccattatatattgggctctgtctctgttc 679
Query: 481 ttgaatcaaagaaacttgtattggc 505
|||||||||||||||||||||||||
Sbjct: 680 ttgaatcaaagaaacttgtattggc 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 904
Length adjustment: 10
Effective length of query: 495
Effective length of database: 894
Effective search space: 442530
Effective search space used: 442530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
