BAC Information

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BAC

Clone NameMSMg01-450K09
Chromosome16 (Build37)
Map Location 88,223,855 - 88,400,066
singlet/doubletdoublet
Overlap geneGrik1
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901
Downstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450K09.T7 (MSMg01no450_k09.b1)MSMg01-450K09.TJ (MSMg01no450_k09.g1)
ACCAG538327AG538328
length745764
length of high quality
(start - end)
378 (81 - 458)312 (84 - 395)
definitionCHROMAT_FILE: MSMg01no450_k09.b1 PHD_FILE: MSMg01no450_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:39 2005CHROMAT_FILE: MSMg01no450_k09.g1 PHD_FILE: MSMg01no450_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,399,689 - 88,400,066)(88,223,855 - 88,224,166)
sequence
GCACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXCCCAAAAAGAGGAC
CGCGGAATTCTCCTTCTTATTTTAGTTGGNCATTGCTGCATGCATCTCCC
ACAAAGTATTACTGCTAACAACAGTACAAGCAAGCAAACAACAACAACAA
TGACCTGGGCCCTTTAATTCCGTAACAAGACAAGCAGAGAGCCAATGTAA
CTCAATGCAATGGGTCAGGACATACTTGACACTTATTGAGATTGCAAAAT
TGCCTTATGTGATGTGCACACTAATACTCAATAATCACCAAGCACCAAGA
CATTTTCAATTGATTTATATACTACAAAGCTCCAATACACACTTCAAAAT
GTTCACTCATTTAAGTGTTTAGGAACTATGTTGGGATGTCCTGCTTGTCA
TTGTGGTCACTCTCTGACCTGTGATTTTATCCTGTTTCTACACCTGGAGA
TTCATGGCTTATGTAGCGATGGCTCAACACACTTCTGACAAACCACCTGA
ATCATTTCCATAATGACCACAGAGCAGTGACACATCCTGGAGGATATCTC
TCTTTGTTCATGTCTCATCAAACTCAAGTTTGAACACATACTTTGTGGCT
CTGAAAAAAATCCTGTGGAACACTGAACCATGTTATTGCTGATAATAGCA
CCTACATGATCATATTCCAGAGTTTTCTATGGTTTACTGTGTCCGTCAAA
CATCCCCATGCCTATTCCTTTTTCTACCTACCTATCCATTCCCCC
TTTCCGATGATATGGGAGGCCTGGNNGGCGCCTGTTTCAAAAATGTAGGT
GACCTATAGAATTTCCGCGAAATTCAGGNCGNCTAAAGGAGCAGTACATA
TTCTTCACAGCTTACCCATCTTCTTCATCCCCCAAACAGTATATTTTTTT
CATATTACTTCTGTGTTCTTAGTGCATTTTATGGTACAATTCTAAACGGC
ATAAACTAAACTCTTGAAAATTCTATAAAATTCAAGTTGCCATATTTTGC
AATTTATTTTTGTAATATAGAACACCAAAATCCACATGAATTTTCATCAG
CCCCTACATACCTAATAGTTTTTCTTTGTTTATATGAAACCAAAGTGTTT
CTGAGCATACTGTGTCTTACCTTATGATTCTATACAAAGGAACAATTCAC
GGTCTACTAAATGTGCTCAATTTCTTCATAATCTTATGACGGAGGCAATG
TTTGATATGTATGCTTCATTTCTTCTCTGGAAATATATATTATAATCTCT
CTCTCGTATGCACCCTCTTATTTTATACCATATTTCCCTAAGATTTATCC
TCATATTTATTTACATCTCATCGTCTATATCAACAGTCTCTTCAATTTTG
CCATCTTCATCTTGCACAACTTATACCTACTCGTCATCGTTTCTTCCTCT
TCTGCAATCTTACATTACTTTTTTACTACTTTTTTCTCTTTCTTCAATTA
GGTTACTTTGATATTCCCTCTTTCCCTCTACCTTCTCTTTTTTACCTCTT
TGTCCTTCCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_k09.b1 MSMg01no450_k09.b1 CHROMAT_FILE:
MSMg01no450_k09.b1 PHD_FILE: MSMg01no450_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:39 2005
         (378 letters)



>mm_chr16_88399489_88400266
          Length = 778

 Score =  716 bits (370), Expect = 0.0
 Identities = 376/378 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattgctgcatgcatctcccacaaagtattactgctaacaacagtacaagcaagcaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cattgctgcatgcatctcccacaaagtattactgctaacaacagtacaagcaagcaaaca 519

                                                                       
Query: 61  acaacaacaatgacctgggccctttaattccgtaacaagacaagcagagagccaatgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 acaacaacaatgacctgggccctttaattccgtaacaagacaagcagagagccaatgtaa 459

                                                                       
Query: 121 ctcaatgcaatgggtcaggacatacttgacacttattgagattgcaaaattgccttatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ctcaatgcaatgggtcaggacatacttgacacttattgagattgcaaaattgccttatgt 399

                                                                       
Query: 181 gatgtgcacactaatactcaataatcaccaagcaccaagacattttcaattgatttatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 398 gatgtgcacactaatactcaataatcaccaagcaccaagacattttcaattgatttatag 339

                                                                       
Query: 241 actacaaagctccaatacacacttcaaaatgttcactcatttaagtgtttaggaactatg 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 acaacaaagctccaatacacacttcaaaatgttcactcatttaagtgtttaggaactatg 279

                                                                       
Query: 301 ttgggatgtcctgcttgtcattgtggtcactctctgacctgtgattttatcctgtttcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ttgggatgtcctgcttgtcattgtggtcactctctgacctgtgattttatcctgtttcta 219

                             
Query: 361 cacctggagattcatggc 378
           ||||||||||||||||||
Sbjct: 218 cacctggagattcatggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no450_k09.g1 MSMg01no450_k09.g1 CHROMAT_FILE:
MSMg01no450_k09.g1 PHD_FILE: MSMg01no450_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:39 2005
         (312 letters)



>mm_chr16_88223655_88224366
          Length = 712

 Score =  549 bits (284), Expect = e-161
 Identities = 305/312 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaggagcagtacatattcttcacagcttacccatcttcttcatcccccaaacagtata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaaggagcagtacatattcttcacagcttacccatcttcttcatcccccaaacagtata 260

                                                                       
Query: 61  tttttttcatattacttctgtgttcttagtgcattttatggtacaattctaaacggcata 120
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 tttttttcatgttacttctgtgttcttagtgcattttatggtacaattctaaacggtata 320

                                                                       
Query: 121 aactaaactcttgaaaattctataaaattcaagttgccatattttgcaatttatttttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactaaactcttgaaaattctataaaattcaagttgccatattttgcaatttatttttgt 380

                                                                       
Query: 181 aatatagaacaccaaaatccacatgaattttcatcagcccctacatacctaatagttttt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 381 aatatagaacaccaaaatccacatgaattttcatcagcccctacatacctaaaagttatt 440

                                                                       
Query: 241 ctttgtttatatgaaaccaaagtgtttctgagcatactgtgtcttaccttatgattctat 300
           | ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 441 cattgtttatatgaaaccaaaatgtttctgagcacactgtgtcttaccttatgattctat 500

                       
Query: 301 acaaaggaacaa 312
           ||||||||||||
Sbjct: 501 acaaaggaacaa 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)