BAC Information

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BAC

Clone NameMSMg01-452G02
Chromosome16 (Build37)
Map Location 61,170,686 - 61,232,804
singlet/doubletdoublet
Overlap genenone
Upstream geneEpha6, LOC100043804, EG668168, LOC668170
Downstream geneLOC100043524, LOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452G02.T7 (MSMg01no452_g02.b1)MSMg01-452G02.TJ (MSMg01no452_g02.g1)
ACCAG539646AG539647
length751750
length of high quality
(start - end)		666 (49 - 714)638 (81 - 718)
definitionCHROMAT_FILE: MSMg01no452_g02.b1 PHD_FILE: MSMg01no452_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:55 2005CHROMAT_FILE: MSMg01no452_g02.g1 PHD_FILE: MSMg01no452_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,232,143 - 61,232,804)(61,170,686 - 61,171,321)
sequence
NTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATTTATATAGCATTCTTTCTTTTCTTCTTTTTGTTTTTTAT
TCTGCAAGGTTATACTTGGCTTGACTGTCCTTGCTGATCTAAGCCCCCCT
CCCCACACACACAAATTATTAACAGCTTCAAAAGAACTTGATTGAAAGAA
GAATCCTATATGAAAGAATCAAGTTTCTTACAAAATAATGATTTTTCTTG
CTTTCTTTGAACTATGGAAATGCTATATTTCAACAAGACTAAGGAAATAC
AGAGCATGAAAAAGATCTTGCCCAGAGTAGTGAAGAAAAATGTTGTCATG
TATGAAAGAACTCTTGAAAGATGTGAGCAAAGAGAAACAAAATTCAATTT
GCCTTAGTTGTTAAATACAAAACCTGAAAGTTAAACAGTATTATTTTATG
TCCTATAATTTAGAAGGGGATCAATTAGATTTGTATATTCAATGAAGTTT
AATTTTCACTTATTTAAATGAATGTAAATAAAATTATTAGAGATACCAAG
GTCAATTTCCCTGGGCAGTAGCATTGAAGCAATAAAGTTAGACTGTAAGT
CAATTTTGTACTAATTAGTATTTTTCAAATCATAAGTCATTGTGGTTTTG
AAGAGGCAGTATCTTGTCTGACTTCTTGAGATCCATATTTTATTAAAGTG
CCTTTAAATTTGGATTCTTCAGGAACATCAGTGTCTGGCAAATGATCACA
N

CCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTAACCTATATTTGAATT
GATTGTGGGTTTCCATATTGATCACTGTCAGTTACAAAGAGAAGTTCTTA
TGGGTATTTGCAATTACTACCAGCCAAGTACATCCTAGAAAGTTAGGAAA
TAAGTTTATCTGGTGTTTTGATAAAGAATGACACACACAAGTTCAAACAT
TTAAATGGTTGGTCATTACTTGAGAAAGAGTAGTAGATATCGCCTTTTTG
GAGAAAGAATGTCTCTAGGGCTGGTGTTTGGGTTTCAAAAGCCCAAGCCA
GGCAGAAAGTCTCTTTCTTCCTCTTGCCTGCAGATCCAAATGCAGAACTC
TCAAATAACTCTCCAGCACTCTGTTTGCTGGCGTTCTGCTATGTTCCCCA
CAATGATGAAAAATGACTAAACCTCTGAATCTTTAAGCAAACCACAATTA
AATGTTTTTATTTTAAGAGTTATTGTGGTCATGTTGTCTCTTCACAGCAG
TAGAAAACTGATTAGGACTCCATACAAAAACTCATGAAAAAACACAACTC
TACATGGCTAAATATGTGGTATAGGTATTTTTAGGGAGGAGACATCCATG
TTGATAAATATTTAGTGTATAATATACTTTAAGATAATTTTAAATATTTC
ATGGCTTTAAGCTATTNCAAAATAATAATAGCCTGCTATTAATTTCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_g02.b1 MSMg01no452_g02.b1 CHROMAT_FILE:
MSMg01no452_g02.b1 PHD_FILE: MSMg01no452_g02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:55 2005
         (666 letters)



>mm_chr16_61231939_61233004
          Length = 1066

 Score = 1257 bits (650), Expect = 0.0
 Identities = 659/662 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatttatatagcattctttcttttcttctttttgttttttattctgcaaggtta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 gaattccatttatatagcattctttcttttcttctttttgttttttattctgcaaggtta 807

                                                                       
Query: 65  tacttggcttgactgtccttgctgatctaagcccccctccccacacacacaaattattaa 124
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 806 tacttggcttgactgtccttgctgatctaagcccccatccccacacacacaaattattaa 747

                                                                       
Query: 125 cagcttcaaaagaacttgattgaaagaagaatcctatatgaaagaatcaagtttcttaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cagcttcaaaagaacttgattgaaagaagaatcctatatgaaagaatcaagtttcttaca 687

                                                                       
Query: 185 aaataatgatttttcttgctttctttgaactatggaaatgctatatttcaacaagactaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aaataatgatttttcttgctttctttgaactatggaaatgctatatttcaacaagactaa 627

                                                                       
Query: 245 ggaaatacagagcatgaaaaagatcttgcccagagtagtgaagaaaaatgttgtcatgta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ggaaatacagagcatgaaaaagatcttgcccagagtagtgaagaaaaatgttgtcatgta 567

                                                                       
Query: 305 tgaaagaactcttgaaagatgtgagcaaagagaaacaaaattcaatttgccttagttgtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgaaagaactcttgaaagatgtgagcaaagagaaacaaaattcaatttgccttagttgtt 507

                                                                       
Query: 365 aaatacaaaacctgaaagttaaacagtattattttatgtcctataatttagaaggggatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aaatacaaaacctgaaagttaaacagtattattttatgtcctataatttagaaggggatc 447

                                                                       
Query: 425 aattagatttgtatattcaatgaagtttaattttcacttatttaaatgaatgtaaataaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aattagatttgtatattcaatgaagtttaattttcacttatttaaatgaatgtaaataaa 387

                                                                       
Query: 485 attattagagataccaaggtcaatttccctgggcagtagcattgaagcaataaagttaga 544
           ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 386 attattagaaataccaaggtcaattttcctgggcagtagcattgaagcaataaagttaga 327

                                                                       
Query: 545 ctgtaagtcaattttgtactaattagtatttttcaaatcataagtcattgtggttttgaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctgtaagtcaattttgtactaattagtatttttcaaatcataagtcattgtggttttgaa 267

                                                                       
Query: 605 gaggcagtatcttgtctgacttcttgagatccatattttattaaagtgcctttaaatttg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gaggcagtatcttgtctgacttcttgagatccatattttattaaagtgcctttaaatttg 207

             
Query: 665 ga 666
           ||
Sbjct: 206 ga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no452_g02.g1 MSMg01no452_g02.g1 CHROMAT_FILE:
MSMg01no452_g02.g1 PHD_FILE: MSMg01no452_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:55 2005
         (638 letters)



>mm_chr16_61170486_61171523
          Length = 1038

 Score = 1191 bits (616), Expect = 0.0
 Identities = 631/636 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactaacctatatttgaattgattgtgggtttccatattgatcactgtcagttacaaaga 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 cactaacctatatttgaattgattgtaggtttccatattgatcactgtcagttacaaaga 260

                                                                       
Query: 61  gaagttcttatgggtatttgcaattactaccagccaagtacatcctagaaagttaggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagttcttatgggtatttgcaattactaccagccaagtacatcctagaaagttaggaaa 320

                                                                       
Query: 121 taagtttatctggtgttttgataaagaatgacacacacaagttcaaacatttaaatggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagtttatctggtgttttgataaagaatgacacacacaagttcaaacatttaaatggtt 380

                                                                       
Query: 181 ggtcattacttgagaaagagtagtagatatcgcctttttggagaaagaatgtctctaggg 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 ggtcattacttgagaaagagtagtagatattgcctttttggagaaagaatgtctctaggg 440

                                                                       
Query: 241 ctggtgtttgggtttcaaaagcccaagccaggcagaaagtctctttcttcctcttgcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggtgtttgggtttcaaaagcccaagccaggcagaaagtctctttcttcctcttgcctg 500

                                                                       
Query: 301 cagatccaaatgcagaactctcaaataactctccagcactctgtttgctggcgttctgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagatccaaatgcagaactctcaaataactctccagcactctgtttgctggcgttctgct 560

                                                                       
Query: 361 atgttccccacaatgatgaaaaatgactaaacctctgaatctttaagcaaaccacaatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgttccccacaatgatgaaaaatgactaaacctctgaatctttaagcaaaccacaatta 620

                                                                       
Query: 421 aatgtttttattttaagagttattgtggtcatgttgtctcttcacagcagtagaaaactg 480
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgttattattttaagagttattgtggtcatgttgtctcttcacagcagtagaaaactg 680

                                                                       
Query: 481 attaggactccatacaaaaactcatgaaaaaacacaactctacatggctaaatatgtggt 540
           ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 attagtactccatacaaaaactcatgaaaaaacacaactctacatggttaaatatgtggt 740

                                                                       
Query: 541 ataggtatttttagggaggagacatccatgttgataaatatttagtgtataatatacttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ataggtatttttagggaggagacatccatgttgataaatatttagtgtataatatacttt 800

                                               
Query: 601 aagataattttaaatatttcatggctttaagctatt 636
           ||||||||||||||||||||||||||||||||||||
Sbjct: 801 aagataattttaaatatttcatggctttaagctatt 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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