BAC Information

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BAC

Clone NameMSMg01-453M02
Chromosome16 (Build37)
Map Location 31,517,804 - 31,518,317
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem44, Lsg1, BC022623, LOC100043122, AI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1
Downstream geneGm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453M02.T7 (MSMg01no453_m02.b1)MSMg01-453M02.TJ (MSMg01no453_m02.g1)
ACCAG540693AG540694
length722732
length of high quality
(start - end)
583 (56 - 638)513 (86 - 598)
definitionCHROMAT_FILE: MSMg01no453_m02.b1 PHD_FILE: MSMg01no453_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:43 2005CHROMAT_FILE: MSMg01no453_m02.g1 PHD_FILE: MSMg01no453_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCGCATACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCTCTTGTATAAAGTATTAGCTCAAATGCTTCCTCC
GTTTTCTTACTGGTTTTCTTTTTATTTACAGAAATCCTACATATGTTCTT
CATACCATCTGTATTTATTGGAAATAAGCCTTCCTTCGTATTGTGGCTTC
TCTTTATCATGTGCAAACCATTCTCTAAAATGTGTTTTCAGGGAGTCCTA
GTGTGGAGCAACAGGACGAGGGCAGAACTTAGGAGCGCAGGAGGCGGAGC
CCGGGCGTGGACCAGCAATCTGAGGGGCGATGCTTGTTGCTGGCCCACTT
TGCTCTTCCAAAGACTGCATTGCCTTTCCTGAAGACCAGCTACATCAAAT
GGCACACCATGTGAATATGATGAGTCGTCCTATGAAGGAACAGAGCCATC
TGCAATACAACCGCTGTTTGGAAACATCATCTTCTTACTGAACTTGGCTG
TCTGCTACATGCTCCCTGTGGAGTGGAACATCCACAAACATTTTAAAACT
CCTGGCACTACTGACTTTGGATCCATGGGCAGTATTTGGATCAATAGCAA
TATTGTTGCCAATGGAAAAACTCAGAGAGAGACACACACACATGTAACCC
AGGTGCTGAGGACTGAACACATGGACTCACATATCATACATGGGTAATCT
CTCCCATTACCACCGGGATTCA
TATTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTGAGGGCAGATT
TGGGAAGGGGGAAGGGGGCAGCTGGCACTGCTCTGGGGGTAAAACCAAGT
ATTGGACAGAAAGAGATGGGAGAGGCATTGGCTGGGGAAGAGAAGGGGAG
TGTGTAATTACACTGAGAGTGTGTAACGTGGCTTCAGGAATGGCAGCTGA
AGACGGGCTTGGGGAACCGCTGTGCAGTAGACATGGCCTTGTGAGAAGTG
AGGCCACAGAGCATCACCCTGCCGTGCTGGCTGTACTCACAGCAACCCAC
CACAGCATCTCAAGGGCTAGAGGGTGCCTATGGGTCATGTCCACTGACTC
CTCCAGGTCAGCACAAAGGCCACCAGGCCACACCAGTTCCCCTTTGCGGA
CTCCAAGGCTAGTGAGGGCCCCAATGTCACATCTGTGCTTAAATGTATGC
TGCCTGGTCTTCCCACCAGAGATATCTCCTTCCCGTTTCTCCTCTGGCCA
CATTTCTACTTTTTCTGGGAAATAATTGATTCTCAGAAGATGAGAGGCAT
GGAGGGCAAGAGATGCCTCCTGGAGCTGAAGGGTAAGTATATTCTGTATC
CCTCACCCTCCTACACTTCAAAAATCTGGGCAGCTTATTCTGCTGAGAGA
GACCATCCCCACTGTAACCTTCACAGGGTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_m02.g1 MSMg01no453_m02.g1 CHROMAT_FILE:
MSMg01no453_m02.g1 PHD_FILE: MSMg01no453_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:44 2005
         (513 letters)



>mm_chr16_31517604_31518517
          Length = 914

 Score =  917 bits (474), Expect = 0.0
 Identities = 504/514 (98%), Gaps = 1/514 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactgagggcagatttgggaagggggaagggggcagctggcactgctctgggggtaaaac 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 cactgagggcagatttggggagggggaagggggcagctggcactgctctgggggtaaaac 655

                                                                       
Query: 61  caagtattggacagaaagagatgggagaggcattggctggggaagagaaggggagtgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 caagtattggacagaaagagatgggagaggcattggctggggaagagaaggggagtgtgt 595

                                                                       
Query: 121 aattacactgagagtgtgtaacgtggcttcaggaatggcagctgaagacgggcttgggga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 594 aattacactgagagtgtgtaacgtggcttcaggaatggcagctgaagacgggcttgggaa 535

                                                                       
Query: 181 accgctgtgcagtagacatggccttgtgagaagtgaggccacagagcatcaccctgccgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 534 accgctgtgcagtagacatggccttgtgagaagtgaggccacagagcatcaccctgctgt 475

                                                                       
Query: 241 gctggctgtactcacagcaacccaccacagcatctcaagggctagagggtgcctatgggt 300
           |||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||
Sbjct: 474 gctggctgtactcacagcaacccaccacagtatctcaagggctagagggtacctacgggt 415

                                                                       
Query: 301 catgtccactgactcctccaggtcagcacaaaggccaccaggccacaccagttccccttt 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 414 catgtccactgactcctccaggccagcacaaaggccaccaggccacaccaggtccccttt 355

                                                                       
Query: 361 gcggactccaaggctagtgagggccccaatgtcacatctgtgcttaaatgtatgctgcct 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gctgactccaaggctagtgagggccccaatgtcacatctgtgcttaaatgtatgctgcct 295

                                                                       
Query: 421 ggtcttcccaccagagatatctccttcccgtttctcctctggccacatttctac-ttttt 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 294 ggtcttcccaccagagatatctccttcccgtttctcctctggccacatttctactttttt 235

                                             
Query: 480 ctgggaaataattgattctcagaagatgagaggc 513
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 ctgggaaataattgattctcagaagatgagaggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 914
Length adjustment: 10
Effective length of query: 503
Effective length of database: 904
Effective search space:   454712
Effective search space used:   454712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)