BAC Information

Click to search

BAC

Clone NameMSMg01-453O06
Chromosome16 (Build37)
Map Location 52,790,804 - 52,931,268
singlet/doubletdoublet
Overlap geneLOC100043430, LOC667895
Upstream geneCblb, Alcam
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453O06.T7 (MSMg01no453_o06.b1)MSMg01-453O06.TJ (MSMg01no453_o06.g1)
ACCAG540797AG540798
length733741
length of high quality
(start - end)		677 (55 - 731)657 (85 - 741)
definitionCHROMAT_FILE: MSMg01no453_o06.b1 PHD_FILE: MSMg01no453_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:54 2005CHROMAT_FILE: MSMg01no453_o06.g1 PHD_FILE: MSMg01no453_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,790,804 - 52,791,472)(52,930,613 - 52,931,268)
sequence
CCCCCATACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGAAATCCACCTGCCTCTGCCTCCTGAGTGCTGGGA
TCAAAGGCGTGCGCCACCATGCCCGGCTTGAATTTATTTCTTATAAATTT
GTTATGTTACTTTTTAGTATGGGGGTATTTTTCACATCTCTTATAATTTT
TCAACAGAAATAAAGTTTCACATGGTACTGATGAGACATTTCCTTCATTC
CTTTCCCCATAATGCTGAAATCAAGTTAAGAATATTTTTATCTGGCTCTT
TATTATAGAAAACAGTAGTCAGCACTTCATACTTAAGAATGCTCATCATG
AGTTTTTTCTCTATGCCATTAATTAAGTCGAAGAAATTTCCTTCTGTTTT
TAGATCAGAAGCCATTTTTGACGTTATATCAACACACTGGTTGCCCAAAA
CAATGAGTTTATGCTATACTTTTTATCGATGTCAATACTGATCTTGGTAG
GATGACATTTCTATTCTCATACCTTTTTTTATGTTCCCTCCTCTTTCCCT
CTGAATCTCTTCCTCTTTCCAGCTAGCCTCCAGTATAATTCCAGGTCTTT
AAAATCAGTCTAGATTCATTCTATCTACAAGAGAAAATAGGTAAAGGTTT
TCTCTCTAATTCTGGTTTATTTCAGTTATTATGATGGGTGTTATTTCCAT
CCATCTTTCTACAAATAAAAGTTTTGTTCCTTC

TATTTTTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGAAATCTCAGAAG
TCTTTTAGGAGCAATTATTCACTGGCAGAGGAGCATTCTGCAATCATCTT
CTTCAGAGCATGGGATGCAAATCTAGACTCGAGTGGGTGAGAAATACTTA
GTAATTTATGACCTGTGAAGAGGATAAACCATAGGCATTTGGTCCATCAG
TGGTCTGCTGAAAAGCAGTGCCTAATGAAGCAGAGGAAGCTTGGAGCTTC
ACCTTCCCTTCTCAGTGGGTGACCTTGCAATGCAGTCTTTATGTCTATTT
TATGTATATACCATCAAATAATGAAGACATGCATCACTATAGGAGAGAAG
TGACAAGCAAAATCATTGTCATTACTCAAAATATGAAAGCTACTAAAATA
CAAGTGTATGACTGCTTACTTTAAAAAGACCAAACTTTACCTAATTAGCA
TACATTAATTTCAAGTATAAAAAATATAGGATGTTCATTTTGCCTTTAAG
TGTTTCATATATTTATCAAGAGTATGTTGAGAACATTTAAATAATAATCT
CTTCCATTATGTTTAAAATAATGGTAGAATTTAAAATAGTGCTTTATGTA
TTAGAAACATTTATTCATATCCAATATCCCAATCACAAAGAGAATCTGAC
ACTTTACAGATCACTTTACAGTAGCTTGGCTCTTTGCCGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_o06.b1 MSMg01no453_o06.b1 CHROMAT_FILE:
MSMg01no453_o06.b1 PHD_FILE: MSMg01no453_o06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:54 2005
         (677 letters)



>mm_chr16_52790596_52791672
          Length = 1077

 Score = 1247 bits (645), Expect = 0.0
 Identities = 663/669 (99%)
 Strand = Plus / Plus

                                                                       
Query: 9   tcagaaatccacctgcctctgcctcctgagtgctgggatcaaaggcgtgcgccaccatgc 68
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 209 tcagaaatccacctgcctctgcctcctgagtgctgggatcaaaggcgtgcaccaccatgc 268

                                                                       
Query: 69  ccggcttgaatttatttcttataaatttgttatgttactttttagtatgggggtattttt 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ccggcttgaatttatttcttataaatttgttatgttactttttagtatgggggtattttt 328

                                                                       
Query: 129 cacatctcttataatttttcaacagaaataaagtttcacatggtactgatgagacatttc 188
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 329 cacatctcttataatttttcaacagaaataaagtttcacaaggtactgatgagacatttc 388

                                                                       
Query: 189 cttcattcctttccccataatgctgaaatcaagttaagaatatttttatctggctcttta 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 389 cttcattcctttccccataatgctgaaatcaagttaagaatatttttatctggctctcta 448

                                                                       
Query: 249 ttatagaaaacagtagtcagcacttcatacttaagaatgctcatcatgagttttttctct 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttatagaaaacagtagtcagcacttcatacttaagaatgctcatcatgagttttttctct 508

                                                                       
Query: 309 atgccattaattaagtcgaagaaatttccttctgtttttagatcagaagccatttttgac 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 atgccattaattaagtcgaagaaatttccttctgtttttagatcagaagccatttttgac 568

                                                                       
Query: 369 gttatatcaacacactggttgcccaaaacaatgagtttatgctatactttttatcgatgt 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gttatatcaacacactggttgcccaaaacaatgagtttatgctatactttttatcgatgt 628

                                                                       
Query: 429 caatactgatcttggtaggatgacatttctattctcatacctttttttatgttccctcct 488
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 629 caatactgatcttggtaggatgacatttctattctcataccttttcttatgttccctcct 688

                                                                       
Query: 489 ctttccctctgaatctcttcctctttccagctagcctccagtataattccaggtctttaa 548
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 689 ctttccctctgaatctcttcctcttcccagctagcctccagtataattccaggtctttaa 748

                                                                       
Query: 549 aatcagtctagattcattctatctacaagagaaaataggtaaaggttttctctctaattc 608
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 749 aatcagtctagattcattctatctacaagagaaaataggtaaaggttttctttctaattc 808

                                                                       
Query: 609 tggtttatttcagttattatgatgggtgttatttccatccatctttctacaaataaaagt 668
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tggtttatttcagttattatgatgggtgttatttccatccatctttctacaaataaaagt 868

                    
Query: 669 tttgttcct 677
           |||||||||
Sbjct: 869 tttgttcct 877


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no453_o06.g1 MSMg01no453_o06.g1 CHROMAT_FILE:
MSMg01no453_o06.g1 PHD_FILE: MSMg01no453_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:54 2005
         (657 letters)



>mm_chr16_52930413_52931469
          Length = 1057

 Score = 1253 bits (648), Expect = 0.0
 Identities = 654/656 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgaaatctcagaagtcttttaggagcaattattcactggcagaggagcattctgcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 tgtgaaatctcagaagtcttttaggagcaattattcactggcagaggagcattctgcaat 797

                                                                       
Query: 61  catcttcttcagagcatgggatgcaaatctagactcgagtgggtgagaaatacttagtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 catcttcttcagagcatgggatgcaaatctagactcgagtgggtgagaaatacttagtaa 737

                                                                       
Query: 121 tttatgacctgtgaagaggataaaccataggcatttggtccatcagtggtctgctgaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tttatgacctgtgaagaggataaaccataggcatttggtccatcagtggtctgctgaaaa 677

                                                                       
Query: 181 gcagtgcctaatgaagcagaggaagcttggagcttcaccttcccttctcagtgggtgacc 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gcggtgcctaatgaagcagaggaagcttggagcttcaccttcccttctcagtgggtgacc 617

                                                                       
Query: 241 ttgcaatgcagtctttatgtctattttatgtatataccatcaaataatgaagacatgcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ttgcaatgcagtctttatgtctattttatgtatataccatcaaataatgaagacatgcat 557

                                                                       
Query: 301 cactataggagagaagtgacaagcaaaatcattgtcattactcaaaatatgaaagctact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cactataggagagaagtgacaagcaaaatcattgtcattactcaaaatatgaaagctact 497

                                                                       
Query: 361 aaaatacaagtgtatgactgcttactttaaaaagaccaaactttacctaattagcataca 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaaatacaagtgtatggctgcttactttaaaaagaccaaactttacctaattagcataca 437

                                                                       
Query: 421 ttaatttcaagtataaaaaatataggatgttcattttgcctttaagtgtttcatatattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttaatttcaagtataaaaaatataggatgttcattttgcctttaagtgtttcatatattt 377

                                                                       
Query: 481 atcaagagtatgttgagaacatttaaataataatctcttccattatgtttaaaataatgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atcaagagtatgttgagaacatttaaataataatctcttccattatgtttaaaataatgg 317

                                                                       
Query: 541 tagaatttaaaatagtgctttatgtattagaaacatttattcatatccaatatcccaatc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tagaatttaaaatagtgctttatgtattagaaacatttattcatatccaatatcccaatc 257

                                                                   
Query: 601 acaaagagaatctgacactttacagatcactttacagtagcttggctctttgccgt 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 acaaagagaatctgacactttacagatcactttacagtagcttggctctttgccgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |