Query= MSMg01no454_f13.b1 MSMg01no454_f13.b1 CHROMAT_FILE:
MSMg01no454_f13.b1 PHD_FILE: MSMg01no454_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:30 2005
(244 letters)
>mm_chr16_13643919_13644562
Length = 644
Score = 462 bits (239), Expect = e-135
Identities = 244/247 (98%), Gaps = 3/247 (1%)
Strand = Plus / Plus
Query: 1 acagagtgagttccaggacagccagggctatacagagaaaccctgtctcgaaaaaaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 acagagtgagttccaggacagccagggctatacagagaaaccctgtctcgaaaaaaaaaa 257
Query: 61 aaaa---ttcctaggtcatagccaaccactgtggtagatgtctgaacttctagcccttga 117
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aaaaaaattcctaggtcatagccaaccactgtggtagatgtctgaacttctagcccttga 317
Query: 118 gaagcaggatggaacagtctaagtctctgtctcaaaaacaaataacaacaaaactaggtt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gaagcaggatggaacagtctaagtctctgtctcaaaaacaaataacaacaaaactaggtt 377
Query: 178 gtctagtatgacatgtttacatgctcgatagcctagactagcctcccaactcctgaccct 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtctagtatgacatgtttacatgctcgatagcctagactagcctcccaactcctgaccct 437
Query: 238 gcctctg 244
|||||||
Sbjct: 438 gcctctg 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no454_f13.g1 MSMg01no454_f13.g1 CHROMAT_FILE:
MSMg01no454_f13.g1 PHD_FILE: MSMg01no454_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:30 2005
(194 letters)
>mm_chr16_13780796_13781389
Length = 594
Score = 356 bits (184), Expect = e-103
Identities = 190/192 (98%)
Strand = Plus / Minus
Query: 1 atgccgcccatgtcttggccaagagagggaagaggaaaggcacggaagattagcctagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atgccgcccatgtcttggccaagagagggaagaggaaaggcacggaagattagcctagag 333
Query: 61 tcccacaagggtgccccaagagtgagtgggaaacaatggaacagacaaggctcgcccggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tcccacaagggtgccccaagagtgagtgggaaacaatggaacagacaaggctcgcccggg 273
Query: 121 cagaggttacccgagggaaccagaggctcctgcgtgcccgagccgagcccgcacgcccgg 180
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cagaggggacccgagggaaccagaggctcctgcgtgcccgagccgagcccgcacgcccgg 213
Query: 181 ccccctcggcac 192
||||||||||||
Sbjct: 212 ccccctcggcac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space: 108996
Effective search space used: 108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
