Query= MSMg01no455_k17.b1 MSMg01no455_k17.b1 CHROMAT_FILE:
MSMg01no455_k17.b1 PHD_FILE: MSMg01no455_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:15 2005
(513 letters)
>mm_chr16_41413698_41414607
Length = 910
Score = 681 bits (352), Expect = 0.0
Identities = 485/556 (87%), Gaps = 51/556 (9%)
Strand = Plus / Plus
Query: 1 gaagagtgaaaggtgatattatagtacatgaatatgcatggatatacaacctctacacac 60
|||||||||||||||||||||||| | ||| |||||||| |||||||||||||||||||
Sbjct: 201 gaagagtgaaaggtgatattatagaatatgcatatgcattcatatacaacctctacacac 260
Query: 61 acaccaacacatacatgtgcttaagaagatttcttgaacattagtaagacaatcattttc 120
||||||||||||| || |||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 261 acaccaacacataaatatgcttaagaagatttcttgaccattagtacgacaatcattttc 320
Query: 121 ttatttacacgtattttactataaaagcatgtatatcacgtagtaaataaagcatgtgtc 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 321 ttatttacacgtattttactataaaagcatgtatatcacatagtaaataaagcatttgtc 380
Query: 181 tggttctttttctaaaaaaaaaaacacattaaatataacacaagtaaccaagacaatttt 240
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggttctttttctaaaagaaa---cacattaaatataacacaagtaaccaagacaatttt 437
Query: 241 tataaccaa----tttttaataggcaggggaaagttatgctctatagattcaaaattaaa 296
||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tataaccaaaaaat----aataggcaggggaaagttatgctctatagattcaaaattaaa 493
Query: 297 attaatgtatgagaatcagaaaaagaaagctaattggctacaaacagaaacaattccact 356
|||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 494 attaatgtattagaataagaaaaagaaagctaattggcttcaaacagaaacaattccact 553
Query: 357 gtcagttttcttcttcctc-ccccct-----tcc--ctcctcttcctcctcctcctcctc 408
||||||||||||||||||| |||||| ||| |||||| |||||||||||||||||
Sbjct: 554 gtcagttttcttcttcctctccccctccccctcctcctcctcctcctcctcctcctcctc 613
Query: 409 ctc----tacctcctcctcctcctccttcttcctctt-tt-------------------- 443
||| | ||||||||||||||||||||||| |||| ||
Sbjct: 614 ctcctcct-cctcctcctcctcctccttcttcttcttcttcttcttcttcttcttcttct 672
Query: 444 ---tcttcttcttctgtt---atgtaatgttaattataaaaaaagttttattttaaaaaa 497
|||||||||||| || |||||| ||||||||||||||||||||||||| ||||||
Sbjct: 673 tcttcttcttcttctttttttatgtaaggttaattataaaaaaagttttatttgaaaaaa 732
Query: 498 gtacctttttggctaa 513
||||||||||||||||
Sbjct: 733 gtacctttttggctaa 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 910
Length adjustment: 10
Effective length of query: 503
Effective length of database: 900
Effective search space: 452700
Effective search space used: 452700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_k17.g1 MSMg01no455_k17.g1 CHROMAT_FILE:
MSMg01no455_k17.g1 PHD_FILE: MSMg01no455_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:15 2005
(465 letters)
>mm_chr16_41585932_41586796
Length = 865
Score = 625 bits (323), Expect = 0.0
Identities = 387/431 (89%), Gaps = 41/431 (9%)
Strand = Plus / Minus
Query: 1 cctttgagaaagaaagaaataaagaaaggaagatcctatgaatgactgtgtgtgacacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cctttgagaaagaaagaaataaagaaaggaagatcctatgaatgactgtgtgtgacacag 369
Query: 61 atggtctctctttttgctaagtcctcaggcattagctctggctgaacttactacctatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 atggtctctctttttgctaagtcctcaggcattagctctggctgaacttactacctatca 309
Query: 121 gaaaactcgttacaaattttaacaaagtgactcattattggataaaattccaaaaaatga 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gaaaactcgtaacaaattttaacaaagtgactcattattggataaaattccaaaaaatga 249
Query: 181 tgatgtggtgatttt-cttct--cccttcc-ccc-ccctctctctctctctctctctctc 235
||| |||||| |||| ||||| || ||| ||| |||||||||||||||||||||||||
Sbjct: 248 tgacgtggtgttttttcttctttcc--tcctccctccctctctctctctctctctctctc 191
Query: 236 at---------------------------------tctccctctctctgtgtatgtgtaa 262
| |||||||||||||||||||||||||
Sbjct: 190 -tctctctctctctctctctctctctctctctccctctccctctctctgtgtatgtgtaa 132
Query: 263 aagaaagagatggtccttagactatgtgataagtccttggattatatagtcataagatta 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 aagaaagagatggtccttagactatgtgataagtccttggattatatagtcataagatta 72
Query: 323 tatggaggagtcatgaatggaatgaaaatgtttgaagaattttaggactctcagctgaaa 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 tatggaggagtcatgaatggaatgaaaatgtttgaagaattttaggactctcagctgaaa 12
Query: 383 agtgaaaagtg 393
|||||||||||
Sbjct: 11 agtgaaaagtg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space: 389025
Effective search space used: 389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
