Query= MSMg01no455_p03.b1 MSMg01no455_p03.b1 CHROMAT_FILE:
MSMg01no455_p03.b1 PHD_FILE: MSMg01no455_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:35 2005
(582 letters)
>mm_chr16_69787205_69788186
Length = 982
Score = 891 bits (461), Expect = 0.0
Identities = 537/579 (92%), Gaps = 32/579 (5%)
Strand = Plus / Minus
Query: 5 gaattcagcatttctggaagaaatctgtaactgaattggcttattgaaaagctaaacatc 64
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 594 gaattcagcatctctggaagaaatatgtaactgaattggcttattgaaaagctaaacatc 535
Query: 65 atcgacaatttaggtagagagctcttagttcctaagaagatgagtagaaaactgagctga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 534 atcgacaatttaggtagagagctcttagttcctaagaagatgagtagaaaactgagccga 475
Query: 125 agtcttgttttttttttttttttttttttttctcctctgttcctaaatagggacatccag 184
||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 474 agtcttg----------------ttttttttctcctctgttcctaaatagggacatccag 431
Query: 185 tgttaatggacatgattctcaacacttttaaattggaatgaaatttttattgctagattt 244
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||
Sbjct: 430 tgttaatggacatgattctcaacacttttaaaatggaatgaaatttatattgctacattt 371
Query: 245 ttaatatgacttgtaagacatgtagaaggcatgtcttacagaataaatcaccctttttat 304
||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 370 ttaatatgact---------tgtagaaggcatgtcttacagaacaaatcaccctttttat 320
Query: 305 tctagggataagttccttataacaagtcatgctcttcaaacataggcatgt-atgactac 363
||||||||||||||||||||||||||||||||||||||||||||||| | | | | ||
Sbjct: 319 tctagggataagttccttataacaagtcatgctcttcaaacataggc-t-tca--a--ac 266
Query: 364 atacagtagtctagaccttaatgatatgatgtatatggaggtttatattagtttatacca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atacagtagtctagaccttaatgatatgatgtatatggaggtttatattagtttatacca 206
Query: 424 catttcaagaaaaaatatgtttgttggtatagtgtcatgacttcaagattggtctacact 483
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 catttcaagaaaaagtatgtttgttggtatagtgtcatgacttcaagattggtctacact 146
Query: 484 ggcaaaattagtttctatataaaaacatacacacaaatgtcccagctctcttccctgtta 543
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 145 ggcaaaattagtttctatataaaaacatacacacaaacgtcccagctcccttccctgtta 86
Query: 544 cacacacacactgttgtccctgtgtctatttctctgaag 582
|||||||||||||||||||||||||||||||||||||||
Sbjct: 85 cacacacacactgttgtccctgtgtctatttctctgaag 47
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_p03.g1 MSMg01no455_p03.g1 CHROMAT_FILE:
MSMg01no455_p03.g1 PHD_FILE: MSMg01no455_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:35 2005
(565 letters)
>mm_chr16_69599982_69600946
Length = 965
Score = 1069 bits (553), Expect = 0.0
Identities = 562/565 (99%)
Strand = Plus / Plus
Query: 1 aatatgaataaaagacatataattgagaacttttaaaaactgattagaaataaagaagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 aatatgaataaaagacatataattgagaacttttaaaaactgattagaaatcaagaagac 260
Query: 61 atttcttacttattttaatttattaaagtgactaaagggtcgtacgcactgagtgtatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttcttacttattttaatttattaaagtgactaaagggtcgtacgcactgagtgtatca 320
Query: 121 gttggctatgtgtgtgtatgtttcttggactgttcttacctgataatttttgaaagagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttggctatgtgtgtgtatgtttcttggactgttcttacctgataatttttgaaagagct 380
Query: 181 agttgttattcataaagatcatccacattgtgtgacaatatttaccttgggagttttatt 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 agttgttattcataaagatcatccacattgtgtgacaatatttaccttggaagttttatt 440
Query: 241 tctcaaaatgacagaagaagagagaaatcaaatcgcagattgaatattgaatgtctgttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcaaaatgacagaagaagagagaaatcaaatcgcagattgaatattgaatgtctgttt 500
Query: 301 attatgtgggttgctattaaagattttatacgaaatggaactcaaaataaagataaagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attatgtgggttgctattaaagattttatacgaaatggaactcaaaataaagataaagaa 560
Query: 361 aactgtgaagaaaaaccagaaaagggtgtatggacatattaaaatcaaaattgcagttgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactgtgaagaaaaaccagaaaagggtgtatggacatattaaaatcaaaattgcagttgt 620
Query: 421 attgtatttagaaaaacagaaaaaaaggtaaaacttgttaagctaatattttgcaaacat 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attgtatttagaaaaacagagaaaaaggtaaaacttgttaagctaatattttgcaaacat 680
Query: 481 gagcgtctagtagaaaatagggagaaaaaaggggtaaattatcctcacctcatactatgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagcgtctagtagaaaatagggagaaaaaaggggtaaattatcctcacctcatactatgg 740
Query: 541 cgtcagtgtactgagctatttcata 565
|||||||||||||||||||||||||
Sbjct: 741 cgtcagtgtactgagctatttcata 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
