BAC Information

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BAC

Clone NameMSMg01-457P08
Chromosome16 (Build37)
Map Location 9,100,074 - 9,100,317
singlet/doubletsinglet
Overlap genenone
Upstream gene4930511J11Rik, BC024814, Abat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
Downstream geneGrin2a, LOC665291, LOC100042534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457P08.T7 (MSMg01no457_p08.b1)MSMg01-457P08.TJ (MSMg01no457_p08.g1)
ACCAG543900AG543901
length764779
length of high quality
(start - end)
249 (73 - 321)245 (81 - 325)
definitionCHROMAT_FILE: MSMg01no457_p08.b1 PHD_FILE: MSMg01no457_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:23 2005CHROMAT_FILE: MSMg01no457_p08.g1 PHD_FILE: MSMg01no457_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAATTCTTCTCTGCTATATAGGTCCTAGATATTGAACT
CAGGTAATCAAGCTTGGTGGTAAGTGCCTTTACCTACCTATTCAGGCACC
TTGACAGTCCTGTTTGTTTGTGAGTTTGTTTTCCAGACAAAGAGTCTCAG
AGGCTTGAAAGTCACCAAGTAGACTAGGCTGGCCAGCCAGTGAAACTGGG
GGAATCTACCTTTCTCCACCTGCCCTGTATTGGGTTTATAAATATATACC
ACCATGTTCCCACCATGCTCTTGCTCCTGTTTATATAGGCTCAGGACTCA
AACTCAGATCTTTGTGCTTGCTGTAAAAGCAAACAACTTGCCATTTCCTC
AGTTTTACAACTGTGTTAGGCTGAGCTTCTCCATGGTGACTATTTCTATA
TAAGACTGTCCTTACACATATGTTAGTCTTTCTGGAGTGGACAGCGATAT
AATGTCCCCCTCCCAGGTATATGATCAGTCCATTATGTTTGTATTCTGTC
TTTAGGTTTCATTTCATTTCCCTAAGTTCCGTGTATGGGTATATTTGTCT
GTTTTCCCTTTCTCCCCTGGTTCTTTTATTATTTATAAACTTCTAAAGCA
TCATTTTTTTTGTCTTTTGTCTAAACTTACACTTGTTCCTGTTTCTTTTT
GGTACGTCTAATCTCTCCTTTATATTTTCTTCTTTTATACATCTCCCCAC
CCCTTTTGTTTCTA
TTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTGCTTGCTAGACAGGT
TTTTATCAGGAGGAAGGAAACTGAACCTGTAATCTCACCAAAACTATATG
ACATTCTGCAGGTAGAGGTTTGTGTGGTTGAATACCATTGGCCAGGGAAG
GGGTGTTGGAAGATGCTTCATTTACATACTCAGTTGCTGTAGGGCCAGGG
AAAAATATTTTCTTACATGGACCTCCTTTTCCTCATAAGTCATTGGCCAC
CAGTCCACGAGGGTGAGTGGAGCATTGTCTTTTGGCAGGGTTCTCATGGC
TGTGAGTATGGTGAAATGACTATTGCGGCCAAAAAGGGGCTGTAGAAGTC
CTGTATAGATAAGCAGCCATGCCCAGAACTAGAAGCATCTGGGGAAATAT
TAGAACTGGCTATGAGGACGGTCCTGAGGCTTAGGAAATTTCCTTCTCAT
AAATGTGCTTGTATTCTTGTTTATTTGTTTTCCCCCCCTTTTTTGGTTTG
TCATATTGTTACCTATTTTTATTGCTATCCCTTACTTTTTCTCTCTTTGC
TCTATTAACTTTCGTATTTTTTCCTTTAGTTCCCTCTTGGTTTTCGCACG
CGCCAATACGCCATTCTAACTTTTTTTTTTTCCTTCTATTTTCCCTCTTT
ACCGTCTTCCTTTTTTTTTTAGCCCTTTTTTCCTCTCTTCACCTTTTCTT
CTTCTTTCATCTCTCCCTTCTTTTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_p08.g1 MSMg01no457_p08.g1 CHROMAT_FILE:
MSMg01no457_p08.g1 PHD_FILE: MSMg01no457_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:23 2005
         (245 letters)



>mm_chr16_9099874_9100518
          Length = 645

 Score =  418 bits (216), Expect = e-121
 Identities = 237/248 (95%), Gaps = 8/248 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtgcttgctagacaggtttttatcaggaggaaggaaactgaacctgtaatctcacca 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggtgcttgctagacaagtttttatcaggaggaaggaaactgaacctgtaatctcacca 260

                                                                       
Query: 61  aaactatatgacattctgcaggtagaggtttgtgtggttgaataccattggccagggaag 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 aaactatatgacattctgcaggtagaggtttgtgtggtcgaataccattggccagggaag 320

                                                                       
Query: 121 gggtgttggaagatgcttcatttacatactcagttgctgtagggccagggaaaaatattt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 321 gggtgttggaagatgcttcatttacatactcagttgctgtagggccagggaaaaata--- 377

                                                                       
Query: 181 t----cttacatggacctccttttcctcataagtcattggccaccagtccacgagggtga 236
                ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 378 -aaaccttacatggacctccttttcctcatgagtcattggccaccagtccacgagggtga 436

                   
Query: 237 gtggagca 244
           ||||||||
Sbjct: 437 gtggagca 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)