BAC Information

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BAC

Clone NameMSMg01-461F20
Chromosome16 (Build37)
Map Location 40,144,263 - 40,144,523
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667400
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461F20.T7 (MSMg01no461_f20.b1)MSMg01-461F20.TJ (MSMg01no461_f20.g1)
ACCAG546505AG546506
length749774
length of high quality
(start - end)		546 (60 - 605)261 (72 - 332)
definitionCHROMAT_FILE: MSMg01no461_f20.b1 PHD_FILE: MSMg01no461_f20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:56 2005CHROMAT_FILE: MSMg01no461_f20.g1 PHD_FILE: MSMg01no461_f20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCACTAGAAATACTACAAATGGTTAATATACCCATGAGACT
CCACTGGAGAAGACTAATTTCTTCTTCACAAGCAGATGCCAATTCTTTAT
ATTTTCTAAGTTAGTATGGGAGTCTGTATCCACTTCCTCCATCAGGCTTG
AGCATGAGAAGGCCCCATTAGTGATGCTAAGGGTAGGTCACATGTCTAAT
AGTAGATCATCACACAAAACAAACTCAATGCTATTTTTAAGATATTTTTT
CTTTTTGTCTCATGTTGCTTTTTTGTGTTTATTTTTTATTAATGTTCTTT
TATTTCTAATTTCTGTGGTTTTTATTCTGATGTTTATTATGCTTGCATTC
TTTTCAAAGAAAGAGAAAGAAATAGCATGGGACTGTGTGGGTGGTGACAT
AGGGATGATCTGTGTTGAATCTGTGGAAAGGAACTATGATCAGGATCTAT
TGTATGAAAAAGATTTTTTTCAATAATAACATTAAGAACCAAGGTGAATA
TAGTTCATTAGCTATCTATTTCTGGAAAAGCATCAAGGGATATAAAACAA
ACAGAGCTAAGCATTTAAAAAATAAATCCAAAAATTTTAAACTTTTAACA
TTTCCAACTATAAATGACTTGCGGTAAAGTTTATTCAGAGTCAGTTAAAA
TGTAGATGAGTCCTATTGCTAGGAGAAACTTCCCCTACATAAACAATGA

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATTGACTTAGCAAGGGAAAGAGGAAAAA
CATTTTTCATCTCTATTTAGCACTTGTTCTCTCTGTCCTGACATGCATGC
ATGCATGTTAGTCATTCTGAGCAACTAACAGAAAGCCTTCTGCTCTCAAG
ATCCCTGATCAAGGTCAAGGACAAAGGATAAATCCACATGTCAAAGTTTA
ATGTCAAGTTGCCCTTTCTTTTCGAACCCATTGGGATTTCTCTTAGAGAA
ATTTGGTTGGTGGTGGTTGTTTTGTGGAGTTGNNNNNNNNNNNNNNNNNN
NNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNN
NNTTNNTTNTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTNTTTTTTTTT
TTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTT
TNTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTT
TTTTTTTTNTTNNTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTNTT
TTTTTTTTTTTTTNTTTTTTNNTTTTTTTTTTTTTTNNTTTTTTNTTTTT
TNTTNTTNTTTNTTNTTTTTTTTTTTNNNTTTTTTTTTTTTNTTTTTTTT
TTTTTTTTNNTTTTTTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_f20.g1 MSMg01no461_f20.g1 CHROMAT_FILE:
MSMg01no461_f20.g1 PHD_FILE: MSMg01no461_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:56 2005
         (261 letters)



>mm_chr16_40144063_40144723
          Length = 661

 Score =  466 bits (241), Expect = e-136
 Identities = 256/261 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattgacttagcaagggaaagaggaaaaacatttttcatctctatttagcacttgttctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tattgacttagcaagggaaagaggaaaaacatttttcatctctatttagcacttgttctc 402

                                                                       
Query: 61  tctgtcctgacatgcatgcatgcatgttagtcattctgagcaactaacagaaagccttct 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tctgtcatgacatgcatgcatgcatgttagtcattctgagcaactaacagaaagccttct 342

                                                                       
Query: 121 gctctcaagatccctgatcaaggtcaaggacaaaggataaatccacatgtcaaagtttaa 180
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 341 cctctcaagatccctgatcaagatcaaggacaaaggataaatccacatgtcaaagtttaa 282

                                                                       
Query: 181 tgtcaagttgccctttcttttcgaacccattgggatttctcttagagaaatttggttggt 240
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 281 tgtcaagttgccctttcttttaaaacccattgggatttctcttagagaaatttggttggt 222

                                
Query: 241 ggtggttgttttgtggagttg 261
           |||||||||||||||||||||
Sbjct: 221 ggtggttgttttgtggagttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 661
Length adjustment: 9
Effective length of query: 252
Effective length of database: 652
Effective search space:   164304
Effective search space used:   164304
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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