BAC Information

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BAC

Clone NameMSMg01-461M18
Chromosome16 (Build37)
Map Location 73,924,258 - 73,924,717
singlet/doubletsinglet
Overlap geneRobo2
Upstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461M18.T7 (MSMg01no461_m18.b1)MSMg01-461M18.TJ (MSMg01no461_m18.g1)
ACCAG546836AG546837
length828757
length of high quality
(start - end)
70 (43 - 112)462 (70 - 531)
definitionCHROMAT_FILE: MSMg01no461_m18.b1 PHD_FILE: MSMg01no461_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:32 2005CHROMAT_FILE: MSMg01no461_m18.g1 PHD_FILE: MSMg01no461_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGGAGTTACTTTGCTAAAGCCACTGGGGTTATGGGAGAGAGGGATGA
GGGAAGAGGTTCCTTTCACCGATGAGAGTGGGCAGAACCTTGATGAGCAG
AGACTCTCTATGGTTTTAGAGCTTTATTATAGAAAGGCAGGGAGAAAGAG
AGAAGGTAGAAGAGAGAGGGGGGAGAGGATAGGGCCTCGAGCATTTTTTT
TTCAGCGGTTTGCTTTGCCTCCTGTTCGCTTTGCGGTTGCCTTGCGAACG
CCGCCGGCGTTTGGTAGTTTGTCGAGGAGGCGCCGGTGCGCATTACGCCT
TTTTTTCCCCCCCCCTTGTTTTTGTCTTTTCTCCCCCCCTTTGACACTTC
TTCTGTTTCCCTTTCCCCCCCCCCTTTGGCTCCTTTCTCTCTCACCTTGT
ACTTTTTCCTTTTCCCCTTTTCCTTTTTTTCTTGCTCCCTATTCCTTTTC
TCCCCTTTTTCCTTTTTTTTACTATTCCCTTTCTATCGTGATTCTTTTTT
ACCCGCTTTGCTGTCTTCCCTGTGTTTCCCCCCTCCCTGCTCTTTATTAT
TGCTAGTCCGTTTTCCCTCCCTGATTATGTCTACCTATTGTCCTCCTTCC
TACCATTCTCTTTCTTTTTCTTTTCTCCTCCTTCCCCGCCCCGTTTCTTT
CCTTCTTTCTTCCCCCCTTTCCTCACCCCTTTCCCTTTTCCCTCGCTTCC
CTTTTCTATCTCCCTAACCGTGCCCTTTTTTCCGGTTCCTTTTATCGGCC
CCTCTCTCCTTTCCCTTATTTTCTCTCC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAATAGTAATTAAATAGGTGCTTGGCTTTGTT
CTTGCCATTAGAGGTTGGCGAGCTTTTGCTGGGGTTGAACTTTATTGTAT
TTTTTATTAGTAATTTGGTATTTGTGTCTGGCCTTTAATAAGTTAGTTCA
CATGCAACATTGATTGGCTGTCATCTTGATCATTACTCATCAGGAAAGAC
AGATAATAAGATGCCTCATACTTGGCAAACAGAATGTCAGGGAACAAGGA
CTTGCCTAGGGAATGTTGAGCAAAACAGCTTTGATTCTTTTCATTGGGAG
TATTTTTGTAGACTTTGTGTGTTTCTACGAAACACACCAATATTGTATTG
CTTACATAAGATGCACATCTCTAACATGTGAAGGAAACCGTTAAACAGAG
CTGTATATGTAAAATGTGCAGTTATCAGCTACTCTCTCCTTTTTCGATGG
TAACTGCAGTAAGCCTATCTATCTATCTCCCTGGTGTAGATTCCGATATG
AGCACCTACCACTGAGGTTGGTGATTGTTCTTTCTGCCGTTAAATATGAT
CTTGCTTCCCGATTTTGCTTGCTTTATTTCCCCCCTGGTTTTTTTTTTTT
CCTCCCCCACTTTAATTATCCTCCTTTATATCTTTTCTTCTTTCCCCTAC
TTCCCCCCCCTTTTGTCCCCTTCTTCTTCCTCTCTCTCCTTCTGTTTTCC
CCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_m18.g1 MSMg01no461_m18.g1 CHROMAT_FILE:
MSMg01no461_m18.g1 PHD_FILE: MSMg01no461_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:32 2005
         (462 letters)



>mm_chr16_73924058_73924919
          Length = 862

 Score =  874 bits (452), Expect = 0.0
 Identities = 458/460 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatagtaattaaataggtgcttggctttgttcttgccattagaggttggcgagcttttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aatagtaattaaataggtgcttggctttgttcttgccattagaggttggcgagcttttgc 601

                                                                       
Query: 61  tggggttgaactttattgtattttttattagtaatttggtatttgtgtctggcctttaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tggggttgaactttattgtattttttattagtaatttggtatttgtgtctggcctttaat 541

                                                                       
Query: 121 aagttagttcacatgcaacattgattggctgtcatcttgatcattactcatcaggaaaga 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aagttagttcgcatgcaacattgattggctgtcatcttgatcattactcatcaggaaaga 481

                                                                       
Query: 181 cagataataagatgcctcatacttggcaaacagaatgtcagggaacaaggacttgcctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cagataataagatgcctcatacttggcaaacagaatgtcagggaacaaggacttgcctag 421

                                                                       
Query: 241 ggaatgttgagcaaaacagctttgattcttttcattgggagtatttttgtagactttgtg 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ggaaggttgagcaaaacagctttgattcttttcattgggagtatttttgtagactttgtg 361

                                                                       
Query: 301 tgtttctacgaaacacaccaatattgtattgcttacataagatgcacatctctaacatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgtttctacgaaacacaccaatattgtattgcttacataagatgcacatctctaacatgt 301

                                                                       
Query: 361 gaaggaaaccgttaaacagagctgtatatgtaaaatgtgcagttatcagctactctctcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gaaggaaaccgttaaacagagctgtatatgtaaaatgtgcagttatcagctactctctcc 241

                                                   
Query: 421 tttttcgatggtaactgcagtaagcctatctatctatctc 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tttttcgatggtaactgcagtaagcctatctatctatctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)