BAC Information

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BAC

Clone NameMSMg01-462P01
Chromosome16 (Build37)
Map Location 81,951,978 - 81,952,439
singlet/doubletsinglet
Overlap genenone
Upstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
Downstream geneEG665260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462P01.T7 (MSMg01no462_p01.b1)MSMg01-462P01.TJ (MSMg01no462_p01.g1)
ACCAG547709AG547710
length818783
length of high quality
(start - end)
372 (46 - 417)459 (75 - 533)
definitionCHROMAT_FILE: MSMg01no462_p01.b1 PHD_FILE: MSMg01no462_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:07 2005CHROMAT_FILE: MSMg01no462_p01.g1 PHD_FILE: MSMg01no462_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTAAACXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGGATCCGCG
GAATTCTTTGTTCTGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTTTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTGTTCAGGAATTTTTCCCCTGTGTTCATATCTTCTAGGCTTTTCCCCAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGCTCCTTGA
TCCACTTATATTTGACCCTAGTACATGGATATTAGTATGGATCGATTCGC
ATTCTTCTTCTTGATCACCATCTGTTGTGTCATCCCCATATTGTTTAAAA
CGTTGTCTTCTTCTCCCCTGGATTGGTTTTAACTCCTCCTTTTCTATCAA
TTCGTTTTTTTTTAGTGCGGTCGCCTTTCTTTTCTTGCCTCTTTTATTTT
ACCTTTCCTCGCTTATTCCTATTGCCTGTTCTTTTTTTTTCTCTCTCTTT
TTTTTTTTCTTTTTATTTTCTCTTTCCGTTATCCTAAGCACCTTTCGTCT
CTGCCCTTTTTCTCTTCCCATCTCCTATATCTCTTCTTTTTCCTCTTGCC
TTTTTTTTCTTCTGATCCTCCTCTCTCTTCGCTCTTATCCCTCACCTTAT
CTCTTTCACATTTCCCAT
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGAAGGAGTTTAGTGGTATGGTGCT
TGCCTGGCATCTTTCTGCGTGTCTCTGGGGTCAATCTACACCATCTGTTA
AAGAAATTAATATATAAGTACCCCTTTACACACACACATCACACTTGCTC
ACACATACAAACACACATATACGGGACATACATACATAGATGCACATGCA
CACACAGAAACTCGCATATGTATGCATGTGTGCAAGTACATACACTCACA
TATGCATGCATGCGTGCAAGTACACACACACATACACATACACACATGAG
CACAGGTATTTATTGGAGTGGTTTGTAGGCTGTGGACAGAGAAGTCCAAT
AATAGATACACATCAATGCAAAGGTCAAGAGTGTGGTAGTTGCTAGATTT
ACAAGACTAAATGTCTGAGTAGTTCCAATCTGGGGTTGGACTGACAGGAG
ATACCTAGAGATTCCTCTATTCTATATAGTAACGCTGAAGAAATGCGTTC
TAATTCCAGTAAAGGCATTTTTTCAAAATAAGAATAATGAAATTTTCTGA
AATATGAAGGACCAACTAGAAAAATCCAACTATCCTTTCCTCCCAGTGTT
ATTTTTTTTTAATATAAGCTGTCATTAAAAATATACGGTTTCCCATCTTT
TGTGGGTATTTCCCCCCCTCCAAATTAACCAAATTGATAAAAACTATTTT
GCCCCCACTGCTCAAACTCCCTCTTTTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_p01.g1 MSMg01no462_p01.g1 CHROMAT_FILE:
MSMg01no462_p01.g1 PHD_FILE: MSMg01no462_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:07 2005
         (459 letters)



>mm_chr16_81951778_81952636
          Length = 859

 Score =  712 bits (368), Expect = 0.0
 Identities = 437/462 (94%), Gaps = 4/462 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagaaggagtttagtggtatggtgcttgcctggcatctttctgcgtgtctctggggtcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagaaggagtttagtggtatggtgcttgcctggcatctttctgcgtgtctctggggtcaa 260

                                                                       
Query: 61  tctacaccatctgttaaagaaattaatatataagtacccctttacacacacacatcacac 120
           |||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| ||
Sbjct: 261 tctacagcatctgttaaagaacttaatatataagtacccctttacacacacatatcatac 320

                                                                       
Query: 121 ttgctcacacatacaaacacacatatacgggacatacatacatagatgcacatgcacaca 180
            ||| |||||||||||||||||||| | ||| ||||||||||||||||||||||||||||
Sbjct: 321 atgcacacacatacaaacacacatacatggggcatacatacatagatgcacatgcacaca 380

                                                                       
Query: 181 cagaaactcgcatatgtatgcatgtgtgcaagtacatacactcacatatgcatgcatgcg 240
           |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaaactagcatatgtaggcatgtgtgcaagtacatacactcacatatgcatgcatgcg 440

                                                                       
Query: 241 tgcaagtac----acacacacatacacatacacacatgagcacaggtatttattggagtg 296
           |||||||||    ||||| ||||||||||||||||||||||| ||| ||||||| |||||
Sbjct: 441 tgcaagtacgtgcacacatacatacacatacacacatgagcaaagggatttatttgagtg 500

                                                                       
Query: 297 gtttgtaggctgtggacagagaagtccaataatagatacacatcaatgcaaaggtcaaga 356
            |||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||
Sbjct: 501 ttttgtaggctgtggacagagaagtccaacaattgatacacaccaatgcaaaggtcaaga 560

                                                                       
Query: 357 gtgtggtagttgctagatttacaagactaaatgtctgagtagttccaatctggggttgga 416
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 gtgtggtagttgctagatttacaagactaaatgtctgagtagttccaatctgggtttgga 620

                                                     
Query: 417 ctgacaggagatacctagagattcctctattctatatagtaa 458
           ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 ctgacaggagatacctagagattcccctattctatatagtaa 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)