Query= MSMg01no467_d15.b1 MSMg01no467_d15.b1 CHROMAT_FILE:
MSMg01no467_d15.b1 PHD_FILE: MSMg01no467_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:01 2005
(244 letters)
>mm_chr16_39692882_39693526
Length = 645
Score = 466 bits (241), Expect = e-136
Identities = 244/245 (99%), Gaps = 1/245 (0%)
Strand = Plus / Minus
Query: 1 aacttgctgctgtttataattatccaatggccagcagaagctcctgccaggagctgtatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacttgctgctgtttataattatccaatggccagcagaagctcctgccaggagctgtatg 386
Query: 61 tggttcaataagccttctgcaagcatgaactctcctccaaggagaggtgtcttgcccagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggttcaataagccttctgcaagcatgaactctcctccaaggagaggtgtcttgcccagt 326
Query: 121 aagtgcgaccttggagttaaggaagctggagagtctcctgagactttctttatattctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagtgcgaccttggagttaaggaagctggagagtctcctgagactttctttatattctcc 266
Query: 181 ttga-tttttttacgatggtaaggggaaatgcaacgaaagacatcttccctttttaatct 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgattttttttacgatggtaaggggaaatgcaacgaaagacatcttccctttttaatct 206
Query: 240 cctgg 244
|||||
Sbjct: 205 cctgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 645
Length adjustment: 9
Effective length of query: 235
Effective length of database: 636
Effective search space: 149460
Effective search space used: 149460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no467_d15.g1 MSMg01no467_d15.g1 CHROMAT_FILE:
MSMg01no467_d15.g1 PHD_FILE: MSMg01no467_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:01 2005
(578 letters)
>mm_chr16_39520039_39521016
Length = 978
Score = 1110 bits (574), Expect = 0.0
Identities = 577/578 (99%)
Strand = Plus / Plus
Query: 1 acatgaatcaaaatttcaaaggagaaaacaattgagtttcagaagctaacagcaggcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatgaatcaaaatttcaaaggagaaaacaattgagtttcagaagctaacagcaggcaca 260
Query: 61 tcaaagaaatggtgttagaagaagtcatggcctatgtcatagaagcaaagaaagccactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaagaaatggtgttagaagaagtcatggcctatgtcatagaagcaaagaaagccactg 320
Query: 121 gcactggagggagtcttgggagggaagcaggtttagaggggtaactgtgtaaccatttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcactggagggagtcttgggagggaagcaggtttagaggggtaactgtgtaaccatttgt 380
Query: 181 tgtcagctattggcaataataaataataataaaaacacagcattagtttagcaaccatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcagctattggcaataataaataataataaaaacacagcattagtttagcaaccatat 440
Query: 241 aaactctattccaatgggaaacaaaacaaaacacaacacaacaaaacaacaaaaaactta 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaactctagtccaatgggaaacaaaacaaaacacaacacaacaaaacaacaaaaaactta 500
Query: 301 aacatttcatttccttagaagcattaaaacctgaacttagcgatgaattagttaggctcg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacatttcatttccttagaagcattaaaacctgaacttagcgatgaattagttaggctcg 560
Query: 361 actgctcagtttctagtagtagctatacctagagaagggtccagttcttgctatttcatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgctcagtttctagtagtagctatacctagagaagggtccagttcttgctatttcatt 620
Query: 421 tttattcttatattttaattaccccattttattagttccttgtagacttctttacattta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttattcttatattttaattaccccattttattagttccttgtagacttctttacattta 680
Query: 481 ctatacaccagtgaaagtacagaaaatcaaatgtccatgtcccagtgattgatgatctta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctatacaccagtgaaagtacagaaaatcaaatgtccatgtcccagtgattgatgatctta 740
Query: 541 gatctgctcgctcccatgttttacattttgacggtggt 578
||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gatctgctcgctcccatgttttacattttgacggtggt 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
