BAC Information

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BAC

Clone NameMSMg01-467E14
Chromosome16 (Build37)
Map Location 12,494,736 - 12,616,327
singlet/doubletdoublet
Overlap genenone
Upstream gene4933437K13Rik, LOC100043171, C530044N13Rik, 2700045P11Rik
Downstream geneEG622509, LOC622553, Ercc4, Gt4-1, Mkl2, Parn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467E14.T7 (MSMg01no467_e14.b1)MSMg01-467E14.TJ (MSMg01no467_e14.g1)
ACCAG551032AG551033
length737751
length of high quality
(start - end)
554 (62 - 615)484 (69 - 552)
definitionCHROMAT_FILE: MSMg01no467_e14.b1 PHD_FILE: MSMg01no467_e14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:06 2005CHROMAT_FILE: MSMg01no467_e14.g1 PHD_FILE: MSMg01no467_e14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,494,736 - 12,495,289)(12,615,844 - 12,616,327)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGGAATTCCTGG
CATTACCACATCACCCTTATTTAAGCCACTCTGTACCTGATATTTTGTCA
GGGTAGCTTTAAGATACTAGTGGAGCAAAGCAAACCCTCATGTCCCAGAT
CCCAAACAGATTCCGGAAGGTTGCAACACTGAGATACTGTGATAGAGAGA
GACTAGAGCCTGCTTTTGTTAAGAACAGATTCCGCCCTGTTTCTGGTTGA
TGATTGGCTAAGTGCAGGGCATTCCTGCATCTGTCTTCACATTGCCTCTG
TCCCTTTTTTCTAATGTTGGGGTCAGCTCCGGGCTCAGTTCTGCACATAG
ACAGGTAAATGATTAGGAACTGGAAATACAAGACTTGTTAATCCTAACTT
TTTCTACATTTTTCTGACCCTCTTCATACTGAAAAAGCTACAATGATAAC
TTTAAGATACTTTAAAAATCTGGAAGAATTTGTCTCCAAATCTTGCCCCA
CTGCTCCAAGCACAGCCATAAACCCTTCATGGAAACAGAGTCATTCTCTG
GAACAGCTTGACTTCCTGGAGCCGGCCCCACCTCCATCAACACAGAATCA
GATTGAAGTTTGACCAAGGCTACCTCACTCTGTACACCTCTTGTTCCCTT
GGCCATAATCCTTCCCCGTGGAATTGTGGGTCTCCTTGCCGTACCCCCAA
AGGCTTCCTTAAATACCCGCTCTTTTTTCTGAATGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATGGCAGCAGGAACATGGAACATGACTTGTTC
ACATCCTGGCAGATGAGAATGTAGAGAATGGAACAGGTATTCGCTCCAAG
GGCCACCCTCTGAACTTCTGCCACTAGTCAGGCTGCAACCCCCTTATATC
TACAACCTGGGGCCTGTAGAGAGCATTTTATACTCAATCATCACAGAGAT
GTATCACCTCTGCTTTTTGGTGACCCTTGCAGTACATGATGAGTAGTAGG
GCTTCAATAAGCTCTGGCTGAGGCTCCCACAGTGGCCACCAATGGAGCAT
GCAAGCAGAAAGCTGAAAGGAAAAAAATCTAGAGGTGCATGTAGCGATCG
ATCAGAACCTAAACAAAAGACCTTGGGCCCTAAGTGTGACCGCAGAATCT
GCACTGTGGTCCTGACTCCTGACTTTCTTCAAACCCTGGGAAGTTCAGGC
AGCCATTACTGGGATGTTGTGAGCTTCAGTGTACATAGACTGGAATTTCC
CATGGTTTTCAGAACTATCAAAATGTATTGAAAATTTCTCTTTGCGTATG
AACATGTGAATGTGGATTATTTCCGTTCCACACTGTACATCAATCATGGA
CAGTATTGCCCTGTACTCTCTTAATTCTCCTCCCCCCGGCACAAGTTTGG
ATTATTAATTACACTCCGTAAGAGTGTGTTTTTCTTTCACTCTCTTTTCT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_e14.b1 MSMg01no467_e14.b1 CHROMAT_FILE:
MSMg01no467_e14.b1 PHD_FILE: MSMg01no467_e14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:06 2005
         (554 letters)



>mm_chr16_12494536_12495489
          Length = 954

 Score = 1025 bits (530), Expect = 0.0
 Identities = 548/554 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacccttatttaagccactctgtacctgatattttgtcagggtagctttaagatactagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacccttatttaagccactctgtacctgatattttgtcagggtagctttaagatactagt 260

                                                                       
Query: 61  ggagcaaagcaaaccctcatgtcccagatcccaaacagattccggaaggttgcaacactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagcaaagcaaaccctcatgtcccagatcccaaacagattccggaaggttgcaacactg 320

                                                                       
Query: 121 agatactgtgatagagagagactagagcctgcttttgttaagaacagattccgccctgtt 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 agatactgtgatagagagagactagagcccgcttttgttaagaacagattccgccctgtt 380

                                                                       
Query: 181 tctggttgatgattggctaagtgcagggcattcctgcatctgtcttcacattgcctctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctggttgatgattggctaagtgcagggcattcctgcatctgtcttcacattgcctctgt 440

                                                                       
Query: 241 cccttttttctaatgttggggtcagctccgggctcagttctgcacatagacaggtaaatg 300
           ||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctttgatcaaatgttggggtcagctccgggctcagttctgcacatagacaggtaaatg 500

                                                                       
Query: 301 attaggaactggaaatacaagacttgttaatcctaactttttctacatttttctgaccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attaggaactggaaatacaagacttgttaatcctaactttttctacatttttctgaccct 560

                                                                       
Query: 361 cttcatactgaaaaagctacaatgataactttaagatactttaaaaatctggaagaattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttcatactgaaaaagctacaatgataactttaagatactttaaaaatctggaagaattt 620

                                                                       
Query: 421 gtctccaaatcttgccccactgctccaagcacagccataaacccttcatggaaacagagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 gtctccaaatcttgccccactgctccaagcacagccataaacccttcgtggaaacagagt 680

                                                                       
Query: 481 cattctctggaacagcttgacttcctggagccggccccacctccatcaacacagaatcag 540
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 cattctctggaacagcttgacttcctggagccggccccacctccatcaacccagaatcag 740

                         
Query: 541 attgaagtttgacc 554
           ||||||||||||||
Sbjct: 741 attgaagtttgacc 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no467_e14.g1 MSMg01no467_e14.g1 CHROMAT_FILE:
MSMg01no467_e14.g1 PHD_FILE: MSMg01no467_e14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:06 2005
         (484 letters)



>mm_chr16_12615644_12616527
          Length = 884

 Score =  897 bits (464), Expect = 0.0
 Identities = 479/484 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggcagcaggaacatggaacatgacttgttcacatcctggcagatgagaatgtagagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atggcagcaggaacatggaacatgacttgttcacatcctggcagatgagaatgtagagaa 625

                                                                       
Query: 61  tggaacaggtattcgctccaagggccaccctctgaacttctgccactagtcaggctgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tggaacaggtattcgctccaagggccaccctctgaacttctgccactagtcaggctgcaa 565

                                                                       
Query: 121 cccccttatatctacaacctggggcctgtagagagcattttatactcaatcatcacagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 564 cccccttatatctacaacctggggcctgtagagagcattttatactcaatcatcacagac 505

                                                                       
Query: 181 atgtatcacctctgctttttggtgacccttgcagtacatgatgagtagtagggcttcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atgtatcacctctgctttttggtgacccttgcagtacatgatgagtagtagggcttcaat 445

                                                                       
Query: 241 aagctctggctgaggctcccacagtggccaccaatggagcatgcaagcagaaagctgaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagctctggctgaggctcccacagtggccaccaatggagcatgcaagcagaaagctgaaa 385

                                                                       
Query: 301 ggaaaaaaatctagaggtgcatgtagcgatcgatcagaacctaaacaaaagaccttgggc 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 384 ggaaaaaaatctagaggtgcatgtagcgatcgatcagaaactaaacaaaagaccttgggc 325

                                                                       
Query: 361 cctaagtgtgaccgcagaatctgcactgtggtcctgactcctgactttcttcaaaccctg 420
           || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cccaagtgtgactgcagaatctgcactgtggtcctgactcctgactttcttcaaaccctg 265

                                                                       
Query: 421 ggaagttcaggcagccattactgggatgttgtgagcttcagtgtacatagactggaattt 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 264 ggaagttcaggcagccattactggcatgttgtgagcttcagtgtacatagactggaattt 205

               
Query: 481 ccca 484
           ||||
Sbjct: 204 ccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)