Query= MSMg01no468_f10.b1 MSMg01no468_f10.b1 CHROMAT_FILE:
MSMg01no468_f10.b1 PHD_FILE: MSMg01no468_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:31 2005
(514 letters)
>mm_chr16_39729034_39729948
Length = 915
Score = 938 bits (485), Expect = 0.0
Identities = 508/519 (97%), Gaps = 9/519 (1%)
Strand = Plus / Plus
Query: 1 aacctgtactattaatcttcaaaaatgtgttttcaccgtccaattttctttctgcatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacctgtactattaatcttcaaaaatgtgttttcaccgtccaattttctttctgcatttt 260
Query: 61 tttcacatggttcccttcttgcccatctcagtgagggtacctctgtgtccttgaattcgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcacatggttcccttcttgcccatctcagtgagggtacctctgtgtccttgaattcgg 320
Query: 121 ttctaattatgtcatttcaacccaatttagtcctcaagtagctatgtatctcacataaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctaattatgtcatttcaacccaatttagtcctcaagtagctatgtatctcacataaaa 380
Query: 181 tt---atcattgttgacctttattaggatttcaggatacttcttttattaaaaaaaaatc 237
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 ttatcatcattgttgacctttattaggatttcaggatacttcttttatt-aaaaaaaatc 439
Query: 238 ataatatgaaatt--ctttttctttgatagcttacaagtattaaattatcaaccgcatga 295
||||||||||||| | | ||||||||||||||||||||||| |||||||||||||||
Sbjct: 440 ataatatgaaattcac---tcctttgatagcttacaagtattaagttatcaaccgcatga 496
Query: 296 actgtgctctttaactaataccccaaacttctcccatccagcccagctgaaactgtccta 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 actgtgctctttaactaataccccaaacttctcccatccagcccagctgaaactgtccta 556
Query: 356 ttgaacaccttcctatcatcttcctgtcacataacacttcctgtcataacaacttcctgt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttgaacaccttcctatcatcttcctgtcacataacacttcctgtcataacaacttcctgt 616
Query: 416 catcttcctatgcaattgtcatttctaggactagtgttgatttctatgatgtgaactatt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 catcttcctatgcaattgtcatttctaggactagtgttgatttctatgatgtgaactatt 676
Query: 476 ttacatgccacctataagtagaatgatgcaacatttatt 514
|||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttacatgccacctataagtagaatgatgcaacatttatt 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 915
Length adjustment: 10
Effective length of query: 504
Effective length of database: 905
Effective search space: 456120
Effective search space used: 456120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no468_f10.g1 MSMg01no468_f10.g1 CHROMAT_FILE:
MSMg01no468_f10.g1 PHD_FILE: MSMg01no468_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:31 2005
(480 letters)
>mm_chr16_39900930_39901809
Length = 880
Score = 859 bits (444), Expect = 0.0
Identities = 471/480 (98%), Gaps = 1/480 (0%)
Strand = Plus / Minus
Query: 1 caaacatcacaaaatcatagaaactctccacacctggaaaaaacatgcttcttttaaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 caaacatcacaaaatcatagaaactctccacacctggaaaaaacatgcttcttttaaaac 811
Query: 61 atgagtcaaaacatgatcagctgctgcagacagtcagaattagtctcttacccccacccc 120
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 810 atgagtcaaaacatgatcagctgctgcagacagtcggaatttgtctcttacccccacccc 751
Query: 121 tggaattaaaacaagaccatatacttataatagtgctgtatcttctacagaaaccaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tggaattaaaacaagaccatatacttataatagtgctgtatcttctacagaaaccaaaat 691
Query: 181 tccagaatttttttttctacttatcaagcttttcttttcctcactcagaaactgatatga 240
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 690 tccagaa-ttttttttctacttatcaagcttttcttttcctcactcagaaacagatatga 632
Query: 241 agcctaaggttcttattgacctcaaaaagtgaactctggtaagataataaagcatataaa 300
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 agcctaaggttcttaaagacctcaaaaagtgaactctggtaagataataaagcatataaa 572
Query: 301 gttcaaattacaaaatgcacagatattacacatatatattcacattagaaggaataagga 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 571 gttcaaattacaaaatgcacagatattacacatatatattcacattagaagggataagga 512
Query: 361 gacaagactgtctttgtgtgtgattgtacatatatgagccagcatgaattattggttata 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gacaagattgtctttgtgtgtgattgtacatatatgagccagcatgaattattggttata 452
Query: 421 ataggtatgcaagaaaaatgtttaacattctacattccattctctcttggtattctaaga 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 451 ataggtatgcaagaaaaatgtttaacattccacattccattctctcttggtattctaaga 392
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
