BAC Information

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BAC

Clone NameMSMg01-468I21
Chromosome16 (Build37)
Map Location 42,870,771 - 42,870,950
singlet/doubletsinglet
Overlap genenone
Upstream geneLsamp, Gap43
Downstream geneBC002163, LOC667484, Zbtb20, LOC100043314, Drd3, Qtrtd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468I21.T7 (MSMg01no468_i21.b1)MSMg01-468I21.TJ (MSMg01no468_i21.g1)
ACCAG551999AG552000
length811888
length of high quality
(start - end)
248 (83 - 330)180 (82 - 261)
definitionCHROMAT_FILE: MSMg01no468_i21.b1 PHD_FILE: MSMg01no468_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:49 2005CHROMAT_FILE: MSMg01no468_i21.g1 PHD_FILE: MSMg01no468_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGTACACG
CGCGGAATTCTCAGCTGATTTCCAACAAATGGCTGAGAAGCACCTGAAAA
AATGTTCAGCACCCTTAATCATCAGGTAAACGCAAATCAAAACAACCCTG
AGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAATTTCAGTGAC
AGCAGATGCTGGTGAGAATGTAGAGAACGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAAGTTTGTACAACCACTCTGGAAATCAGTCTGGCTGTTCC
TCAGAAAATTGGACATAGTACTACTGGAGTTACTTGTTTATACCTCTCCT
GGGCATATATCCAGAAGATGTTCCAACAGGTAAGAAGGACACATGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATACCCAGAAGCTGGAAAGAACCC
AGATGCTCTTCAACAGAGGAGTGGATACAAAAAATGTGGTACATTTACAC
CAAGTGAAACAACTCAGTTATTATAAAGAATTGATTTTATTAAATTCCCC
AGTTTTATGGTGGGTCCCTGGAGGGGCTTCTCTCTGATGTGTGTTAACCC
CCTTTCCTTATAATTCTCTCGGTGTATGGTCCCCCTGTGTAATGTGTTGT
GTCCTCCCCTACCCTTATAATACGTCCCTCCCCTACGTTTTCCTTTGTTT
CACTTCCTCGACGCTTCTATTCCACCCTCTCGTCTCACTCTTTCGTTTTC
CTCCTCTTTCATTTCAGCCTCTTATCCCCCCTGTCCTTTTTATTCTTCCT
ACCATCCTCCT
NNNCCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTATATTCTTCACTAG
ACTCCAACTGAGCCTGTACTCTCTAGGGGTGGGTTTGCAGACATGTTTCA
TCTGCCTTGATAGACATTTTTTTTTAAGTTTTGCATATAGAGTTTGTATC
TATGTCTAGGCGAACTCTGTTAGTACTTATGATTTATTAGTGCTCTAGAT
TTTGTTGAGATTCCTGTTAAATGGGTTATTTTTCCCTGGTAGACCCTGTA
AGTTGGCCCCTATAGTCTACCTCCCCCTTTTTTTTTTTTTACGCCCAACT
CCCCTCCTATTGTTTACTTTTTTTTTTTCCTACCTCTCTTTCTTATTCTT
TTTAGTTCTGTTTTTTTTTTTTGTTGGCCTCCATCCACCTCTATAATCTC
TTACTTTCTTTTTTTTCGCTTTCTTCTTTTTTCTATTTCTTTTTCTCCCT
TTCCTTCTACTACTCCCTTTTTTTGTTTATTTTTCCTCTTACTCTTTCTT
TCTCTTTCTTCGCTCCCTTCTCTTTTAATAATTCTTTTTTACATTACACT
TTTCTTTCTCCTTTCCTTATATTTTTTTCATTTCATTATTTCTTTTTTCC
ATCTTTTATTCTCCCGCTATAACATTCATGTTATATTTACTTGATATTCT
TCTTTCCCTTCCGCTTTTTATTCTCTATTCCTTTCTTCTCTTTTCTCCCT
CCTTCCCATATTTTTATAATACCACTCTTGTCCCTTCTCTCTCTCCACTT
ATCTTTCCTCCTCTCTTTTCTTCTCTATCTTAGCCTTTCCTCCTTTTTAC
CCTACTTCTTTTCTTCCTCTTTCATCACACCTTCTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_i21.g1 MSMg01no468_i21.g1 CHROMAT_FILE:
MSMg01no468_i21.g1 PHD_FILE: MSMg01no468_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:49 2005
         (180 letters)



>mm_chr16_42870571_42871150
          Length = 580

 Score =  340 bits (176), Expect = 2e-98
 Identities = 179/180 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttatattcttcactagactccaactgagcctgtactctctaggggtgggtttgcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 actttatattcttcactagactccaactgagcctgtactctctaggggtgggtttgcaga 321

                                                                       
Query: 61  catgtttcatctgccttgatagacatttttttttaagttttgcatatagagtttgtatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 catgtttcatctgccttgatagacatttttttttaagttttgcatatagagtttgtatct 261

                                                                       
Query: 121 atgtctaggcgaactctgttagtacttatgatttattagtgctctagattttgttgagat 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atgtctaggcaaactctgttagtacttatgatttattagtgctctagattttgttgagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space:    98384
Effective search space used:    98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)