CTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCGCG
GAATTCATTTATTCCTCTGCATCTACACACAAGGCTAGAAAGTGGATAGT
GGAAGCAGAAGGCAGAGCTGAATGTAATTTGGAAGAAAATATACAAATAC
AAATGGAAAATAAAATTATTTTTCCTCCCCACAGGAAAATCCTTCTTAAA
TGCTGTCTAGATTCCACATTAGAGTATATACATAGTTAACAGGGAACTTT
TACAACAGACCCTACTGTAACAGGAGTTTGATTTCAGTTCTGTTATGTGT
GTTTCCCTTTTTACTTATATTTATAAAGCTACCATGGATACTAACTTGAA
AATACAATTGTAAACCTGGAACTTGTCTGAAGCAGTCAAGGTCATGGACC
TTGTCTTGGAATTCAGAACCAGCTTACACTAGTTCAAGACCACAACGTCT
TATGATATAGTCCTTTCATACACAATCATATCAAGCCGGAGGAAACATTG
GGAAGGAATCCTTAGAACTTCCTCACTTGCAGATTACATTTTACGTCAAC
TTACAGGTTTAAAAAATAAAAAGGATTCAATTTCTAGGNTTGAGGCGCGG
AAATTTGTATCCTCAATAACTATATGGAAAAGTCAAGTCCATCTCTGAAG
CTCCTATTTCAGGGAAGAGAAGGAAATTCAACCAAAGCAACCCTCCCTAC
TTTCAGGGCAGGCCAAACCCACATGCATATCCCCTCGGAACCTTCTAAAC
TATGTGACA

CTATTTCTTCGTCTACTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGCTAAGACTGTCTCCTTT
CTTTCACAGCATTCACCACAGTTTTCAAAGTGCATTTGTTTTTCTTTCAC
TATGGTAACCTGACTCTCTGTGTGTATCAGTGGAGCTCAGAACCATCAAT
TATAACCTGGAGGAAAAGTGTGCTGTGTGCTTTGGGAAAGAGGCCAATAG
TTTTATCTCAAATCGTTTCTGTACTGATTGCTCAGTCTACCTAACTCTTA
ACCATTGCGTCTGCATTACCTTGTTTTCTTCATTATTTGCTGTAGCTGGC
ACTGTGCGATTCATAGACCCCATGGCCCCATGATATTTAATTCCTATTTC
GTAGTTCTTTTTTTCTTTCAACACTAGATTCAGACATTCTGAATACTCTT
TTCATCTTATCTACCACAGATTAAAGCGACTTCTATATTCATCTGTTATT
TTCCCCCCTATCTGTTGCGACCTTTGTAACACAACCCCCCTGAACTTTCG
TTCCTGGATTGGTTTTCTGTCGTTGTTACTTACTCCTTCCCGCCATTCTC
CTTTTACGCTTTTTACCCCCGCGTTATTTCCCTTTTCCCCTCTTCTTTTT
TCCCCCCTTTCTTTCTTTACCCCTCTTCTCCCCTCTTTCTTTTTTTCCCC
CCATTGCTTACACTTTTATTTTTTTGCCACATCCCTCTCTATCTCCCTCT
TTCTTTTTCCCTCTCTGCC

Query= MSMg01no469_d09.b1 MSMg01no469_d09.b1 CHROMAT_FILE:
MSMg01no469_d09.b1 PHD_FILE: MSMg01no469_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:43 2005
         (546 letters)



>mm_chr16_63458141_63459092
          Length = 952

 Score =  719 bits (372), Expect = 0.0
 Identities = 409/424 (96%), Gaps = 6/424 (1%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattcatttattcctctgcatctacacacaaggctagaaagtggatagtggaagcagaa 68
           ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 209 gaattcatttattgctctgcatccacacacaaggctagaaagtggatagtggaatcagaa 268

                                                                       
Query: 69  ggcagagctgaatgtaatttggaagaaaatatacaaatacaaatggaaaataaaattatt 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ggcagagctgaatgtaatttggaagaaaatatacaaatacaaatggaaaataaaattatt 328

                                                                       
Query: 129 tttcctccccacaggaaaatccttcttaaatgctgtctagattccacattagagtatata 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tttcctccccacaggaaaatccttcttaaatgctgtctagattccacattagagtatata 388

                                                                       
Query: 189 catagttaacagggaacttttacaacagaccctactgtaacaggagtttgatttcagttc 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 catagttaacagggaacttttacaacagaccctactgtaacaggagtttgatttcagttc 448

                                                                       
Query: 249 tgttatgtgtgtttccctttttacttatatttataaagctaccatggatactaacttgaa 308
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 449 tgttatgtgtgtttccctttttacttatttttataaagctaccatggatactaacttgaa 508

                                                                       
Query: 309 aatacaattgtaaacctggaacttgtctgaagcagtca-ag-----gtcatggaccttgt 362
           |||||| |||||||||||||||||||||||||| |||| ||     | ||||||||||||
Sbjct: 509 aatacagttgtaaacctggaacttgtctgaagcggtcagagcactggccatggaccttgt 568

                                                                       
Query: 363 cttggaattcagaaccagcttacactagttcaagaccacaacgtcttatgatatagtcct 422
           |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 569 cttggaattcagaaccagcttacaatagttcaagaccacaacatcttatgatatagtcct 628

               
Query: 423 ttca 426
           ||||
Sbjct: 629 ttca 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 952
Length adjustment: 10
Effective length of query: 536
Effective length of database: 942
Effective search space:   504912
Effective search space used:   504912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)