BAC Information

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BAC

Clone NameMSMg01-472B15
Chromosome16 (Build37)
Map Location 86,515,658 - 86,635,303
singlet/doubletdoublet
Overlap genenone
Upstream geneCyyr1, LOC100039994, LOC622000, Adamts1, Adamts5, LOC100040025, LOC100039780
Downstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472B15.T7 (MSMg01no472_b15.b1)MSMg01-472B15.TJ (MSMg01no472_b15.g1)
ACCAG554714AG554715
length779758
length of high quality
(start - end)		177 (47 - 223)562 (74 - 635)
definitionCHROMAT_FILE: MSMg01no472_b15.b1 PHD_FILE: MSMg01no472_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:37 2005CHROMAT_FILE: MSMg01no472_b15.g1 PHD_FILE: MSMg01no472_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,635,132 - 86,635,303)(86,515,658 - 86,516,219)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATAGTTTCAGGTGATCTTGGATTAATCCAGTGAGCTATTGCTT
TGATATGCTCTCCTTGGGATGTAATATCACATTTGGTTGTCATATCTTTC
TAAACGGTGACAGCTTTGGGACTCTTTTTATTGGTTAGGTTATTAGTTTT
GAGGGGTAGTTGTATGGATTTGNAANANGNNNNNNNNNNNNNNNNTTTTT
TGTNNNNNNNNNNNNNTNNNNNTTTTTTTTTTTTTTTTTTTTAAGGNNNN
NNNNNNNNNNTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTTTTTTTTCCCCCCTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTCTCTCTTTTTTTTTTCCCCCCTTTTCTCTTCTTTCTTTT
CTTTCTTCTCCCCCTTTTTTTTCTTTCTCTTTTNTTTTTTTTCTTTCTTT
TCTTCCCTCCTTTTCTTTCTTTTCCTTCCCTCCTCTTCTTTTCCCTTTTC
TTTCTTTTTTTCCTTTATTCCTCTTCTTTCCCCCCCTTCTTTTCCTTATT
CTTTTCTCTATTTATATTCTTTTTATTACACTCTTCCTATACTACCACTA
ATTTATTTTTTCTTTCCCAACACTACCACCACCTCCCCACCCTAATATTT
CCTCTAATTCATTTTCTTCCCACTAATTATTTAAATATTCTCTTCTTTTT
TCCTCCCCTACAAAACACTTTTTCTTTTN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTAGTGGGTTTGATTTTGTTTCCCAA
AATAACTGAACTTTCTCTCTAAAAGTAACACTCCAGTTATAAGAAGCTAT
GAACTTGGAGGACACTAGCGCCAACATTCAGTGAAAACTGTTTAACTTTC
TGTGTCATTTTCAGATGCAGACTGGTAGGTGATCAGGAAATAATGAATAA
AAACAAAGGGAAAGAAACTTTACAAAAAACCATACCCTTTGTTGTCTACA
TGACCAAAAGTGTGACATAATTACTAATACGTTATCCGCCATCTTTTCTT
GGCCGTGATGACTCATAAAATTAGCTGCGGAGAATGAATGCATACAATAA
TTGCATTGGTGGCTATATTACATACTTGTCTATAAGTAAATCTTTTCAGG
AACTTAGAAAGTTGGTCAGAGTTAAAAAGGTAGGAGAGTCAGACATAAGC
ATTTAAAAATCTAAATCTGATGCCTTTTCTCCAAAACTCAGATATACAGT
GTATTAATATGAATTTTCTAAACTGGAATAAAAAGCCAAGATTTGTAATC
CCTATTTGACATTACTGAAGCACGAGTATGGCTTTGCAAGCAGAAACATA
ACAGCCAGAAGACAGAGGACTTTCCCTTTCCTATACACTGATTTGACTTC
AGAAAATAAATAATGTTAAACTATAAGGAAGGAATATAGGCTATGATTAT
GTTTTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_b15.b1 MSMg01no472_b15.b1 CHROMAT_FILE:
MSMg01no472_b15.b1 PHD_FILE: MSMg01no472_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:37 2005
         (177 letters)



>mm_chr16_86634928_86635504
          Length = 577

 Score =  317 bits (164), Expect = 2e-91
 Identities = 170/172 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatagtttcaggtgatcttggattaatccagtgagctattgctttgatatgctc 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gaattccatagttcccggtgatcttggattaatccagtgagctattgctttgatatgctc 317

                                                                       
Query: 65  tccttgggatgtaatatcacatttggttgtcatatctttctaaacggtgacagctttggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tccttgggatgtaatatcacatttggttgtcatatctttctaaacggtgacagctttggg 257

                                                               
Query: 125 actctttttattggttaggttattagttttgaggggtagttgtatggatttg 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 actctttttattggttaggttattagttttgaggggtagttgtatggatttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no472_b15.g1 MSMg01no472_b15.g1 CHROMAT_FILE:
MSMg01no472_b15.g1 PHD_FILE: MSMg01no472_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:37 2005
         (562 letters)



>mm_chr16_86515458_86516419
          Length = 962

 Score = 1025 bits (530), Expect = 0.0
 Identities = 554/562 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actagtgggtttgattttgtttcccaaaataactgaactttctctctaaaagtaacactc 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 actagtgggtttgattttgtttcacaaaataactgaactttctctctaaaagtaacactc 260

                                                                       
Query: 61  cagttataagaagctatgaacttggaggacactagcgccaacattcagtgaaaactgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagttataagaagctatgaacttggaggacactagcgccaacattcagtgaaaactgttt 320

                                                                       
Query: 121 aactttctgtgtcattttcagatgcagactggtaggtgatcaggaaataatgaataaaaa 180
           | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 agctttctgtgtcattttcagatgcagactggtaagtgatcaggaaataatgaataaaaa 380

                                                                       
Query: 181 caaagggaaagaaactttacaaaaaaccataccctttgttgtctacatgaccaaaagtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaagggaaagaaactttacaaaaaaccataccctttgttgtctacatgaccaaaagtgt 440

                                                                       
Query: 241 gacataattactaatacgttatccgccatcttttcttggccgtgatgactcataaaatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacataattactaatacgttatccgccatcttttcttggccgtgatgactcataaaatta 500

                                                                       
Query: 301 gctgcggagaatgaatgcatacaataattgcattggtggctatattacatacttgtctat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctgcggagaatgaatgcatacaataattgcattggtggctatattacatacttgtctat 560

                                                                       
Query: 361 aagtaaatcttttcaggaacttagaaagttggtcagagttaaaaaggtaggagagtcaga 420
            |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 gagtaaatcttttcagggacttagaaagttggtcagagttaaaaaggtagaagagtcaga 620

                                                                       
Query: 421 cataagcatttaaaaatctaaatctgatgccttttctccaaaactcagatatacagtgta 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 cataagcatttaaaaatctaaatctgatgccttttctcccaaactcagatatacagtgta 680

                                                                       
Query: 481 ttaatatgaattttctaaactggaataaaaagccaagatttgtaatccctatttgacatt 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 681 ttaatatgaattttctaaactggaataaaaagccaagatttgtaatccctatttgacagt 740

                                 
Query: 541 actgaagcacgagtatggcttt 562
           ||||||||||||||||||||||
Sbjct: 741 actgaagcacgagtatggcttt 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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