Query= MSMg01no474_l06.b1 MSMg01no474_l06.b1 CHROMAT_FILE:
MSMg01no474_l06.b1 PHD_FILE: MSMg01no474_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:15 2005
(461 letters)
>mm_chr16_57721015_57721875
Length = 861
Score = 542 bits (280), Expect = e-158
Identities = 307/316 (97%)
Strand = Plus / Minus
Query: 5 gaattctcccataattcaccttaaagccaaagcacaataaatttggtgaatctgcagcgg 64
|||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 316 gaattctcccataaatcaccttaaagccaaaacacaataaatttggtgattctgcagcgg 257
Query: 65 gatgacttactgccatagtgccttagaagtaagagttagacttgtttcttaaggctgcca 124
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gatgacttactgccatagcgccttagaagtaagagttagacttgtttcttaaggctgcca 197
Query: 125 agataagtcggattgtaagtgtttacaatgcaagcaggagcacccaagtccaatctctaa 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 196 agataagtcggattgtaagtgtttgcaatgcaagcaggagcacccaagtccaatctctaa 137
Query: 185 agctcacacagaataaaaaattaaaaagctaaatatggtagtcctcacttagaatcccag 244
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 136 agctcacacagaataaaaaactaaaaagctaaatatggtagtcctcacttataatcccag 77
Query: 245 cacttgggaagtagttagaaggggatgcctggtgcttgctagtcagagaacctcacctac 304
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 76 cacttgggaagtagttaaaaggggatgcctggtgcttgctagccagagaacctcacctac 17
Query: 305 ttggtaagttacaggc 320
||||||||||||||||
Sbjct: 16 ttggtaagttacaggc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no474_l06.g1 MSMg01no474_l06.g1 CHROMAT_FILE:
MSMg01no474_l06.g1 PHD_FILE: MSMg01no474_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:15 2005
(492 letters)
>mm_chr16_57528280_57529171
Length = 892
Score = 739 bits (382), Expect = 0.0
Identities = 442/492 (89%), Gaps = 49/492 (9%)
Strand = Plus / Plus
Query: 1 caggccagcctgaactaaaaaatgagaccttgtctcagaaaagacattactaaatgttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggccagcctgaactaaaaaatgagaccttgtctcagaaaagacattactaaatgttaa 260
Query: 61 gagaaagtagagcaagtagaacttgcatacatacatttctagagactgtagctgctattt 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaaagtacagcaagtagaacttgcatacatacatttctagagactgtagctgctattt 320
Query: 121 atagatgtgtcattccattactatgagtccactgatgttgtatccaaaacagacagaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagatgtgtcattccattactatgagtccactgatgttgtatccaaaacagacagaaat 380
Query: 181 aatgtaaagtaacagaggtcaaagtgttggttacttccaaaaaaggaaagcagatagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtaaagtaacagaggtcaaagtgttggttacttccaaaaaaggaaagcagatagaaa 440
Query: 241 cgggaagtttattaaaaaaaagaagagaaaagaaaagaaaagaaaagaaaagaaaagaaa 300
||||||||||| |||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 441 cgggaagttta--aaaaaaaa----agaaaagaaaagaaaagaaaagaaaag----gaaa 490
Query: 301 agaaaagaaaagaaaagaagagaaaagaaaagaagaggaaaaaaaaaagagtctacgcta 360
| ||||||||||||||||||||
Sbjct: 491 a---------------------------------------aaaaaaaagagtctacgcta 511
Query: 361 ctcattctaagactggagcacttctgacatgaccggttctaacagcagccaaacaatatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ctcattctaagactggagcacttctgacatgaccggttctaacagcagccaaacaatatg 571
Query: 421 gagggtgtgaagtggggagcagggcagggaacagatgcctgcactgtgatggtggcagga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gagggtgtgaagtggggagcagggcagggaacagatgcctgcactgtgatggtggcagga 631
Query: 481 gcacactcagag 492
||||||||||||
Sbjct: 632 gcacactcagag 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
