BAC Information

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BAC

Clone NameMSMg01-476K03
Chromosome16 (Build37)
Map Location 32,717,900 - 32,718,148
singlet/doubletsinglet
Overlap genenone
Upstream geneDlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265
Downstream geneLOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4, Zfp148, Slc12a8, 4632417D23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476K03.T7 (MSMg01no476_k03.b1)MSMg01-476K03.TJ (MSMg01no476_k03.g1)
ACCAG558177AG558178
length783749
length of high quality
(start - end)
186 (130 - 315)247 (77 - 323)
definitionCHROMAT_FILE: MSMg01no476_k03.b1 PHD_FILE: MSMg01no476_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:48 2005CHROMAT_FILE: MSMg01no476_k03.g1 PHD_FILE: MSMg01no476_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATGAGTGGGTGGCCGCTAGAGGAGTGCCTATTTCAAGAGGATCCGCGGA
ATTCACTCTGTTGCTCAGGCTGGCCTCGAACTCAGAAATTTGTCTGCCTC
TGCCTCCCAAGTGCTGGTATTACAGGTGTGCGCCACCACCGCCCAGCCCA
GCCTGATTTCTTATACTACCTAGGGCCACCTGCCTGGGGATGACATTGCC
TACAGTGGGCCGGGCAATCCCGTATCCTTCATCAATCAAGGTAATTCTCC
CATAGGCTTCTCTACAGACAATATGATGTGGGTAATTCTTCAAGCAAGGC
TGCTTCTTCCCAGGTCTCTTTATTTTATGTCAAGTTACAAGACAAAACAA
AACTAATGGGTGCAAGCCTTTCTTTCTGGCTCTCAGGAGGCAGAGGTAGG
TGGATCTCTGAGTTTGAGGCCAGCTTCTTCTTAGAGAGAGTTCCAGGACA
GCCAGGGCTCCATGGAGAAACCCTGTCTCATAAAGTCAAAGCCAAACAAC
AACAACAACCAGTAAAGCAAATAAACCACACAAACCGAACAACATCTACT
AACCCTACTTCAACTACCCAGCACAGGGATTCACGGAAGCCAGAAGTTGT
GTGCGCCTGCCCTCCCATATTATGTTGTTCCCCCCTATATGTCCCCTCCT
TCCACTGCCTTGCCTATCCCCCTCCTTTATCCTCTACCGTAGATCCACTT
TCGCCAATCGCTTCTGTCGAACTTCTCTGCCCTTAAGCCTCTTTTAGTCC
TCTCCCCCTTTCTGATCACCCGCCTCTGTTTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTCTAATTAAGTTTATAAAAT
AAAATTTAAAAATAAATTGACTTAAGAAAGAAAGGCAGGTGACAGACAGG
CCGTGGCTGGCTGCGACTTTACCCGTACTACTCCTATGCCTTTGCTCGGG
CCGAGCATTTGCCCTTCGCTCTACATTCCTGTAGTATTGCTTGTCTGAGA
TTCCAGAAGCCAGCTGTCAACCATAAAGCTGACTCAAACCTGGGACATCC
TGCCCTGAAGATAGAAGAGCATTATTTTAGGGACTTGAACCCCTGTAGGC
ACCAAAACACCAGGCTGCTCGACTCAGGACCCTGGAAATGCTATTTTCCT
TACGTGGCTCCTAATCTGACCCTCACATTAATATTCTCCCACTTCCCCCA
AAGAAAGGAGGACTTGAGGCACTAACCTGACGGCTATCCAGGCTGCCCAC
GCCCTTTCGAGTCTTCCGTTGTGTCTGAACCTCATCCGTCAGACCCTGGC
GTCTCTGTGGNATGAGCTTCCTTCCAGATCTGAATTGGACCACATGACTA
CTCTGCTTTCCACACAGGGAGAAGAGCCTGGAGTTTTGTGACAGTGAGAG
CGCACAGGTATTACGGATGCCGACCGGGCACTAGGATGCCGCTCTGTCTT
GTTAAGTATTACACCCACGTCTTGCACCTTTTTTAAACTCTTCCTGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_k03.g1 MSMg01no476_k03.g1 CHROMAT_FILE:
MSMg01no476_k03.g1 PHD_FILE: MSMg01no476_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:48 2005
         (247 letters)



>mm_chr16_32717658_32718307
          Length = 650

 Score =  451 bits (233), Expect = e-131
 Identities = 244/249 (97%), Gaps = 3/249 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttctaattaagtttataaaataaaatttaaaaataaattgacttaagaaagaaaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tttttctaattaagtttataaaataaaatttaaaaataaattgacttaagaaagaaaggc 432

                                                                       
Query: 61  aggtgacagacaggccgtggctggctgcgactttacccgtactactcctatgcctttgct 120
           |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 431 aggtgacagacaggccgtggctggctgcgactttacccatacttctcctatgcctttgct 372

                                                                       
Query: 121 cgggccgagcatttgcccttcgctctacattcctgtagtattgcttgtctga---gattc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 371 cgggccgagcatttgcccttcgctctacattcctgtagtattgcttgtctgagatgattc 312

                                                                       
Query: 178 cagaagccagctgtcaaccataaagctgactcaaacctgggacatcctgccctgaagata 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cagaagccagctgtcaaccataaagctgactcaaacctgggacatcctgccctgaagata 252

                    
Query: 238 gaagagcat 246
           |||||||||
Sbjct: 251 gaagagcat 243


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 650
Length adjustment: 9
Effective length of query: 238
Effective length of database: 641
Effective search space:   152558
Effective search space used:   152558
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)