BAC Information

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BAC

Clone NameMSMg01-478C19
Chromosome16 (Build37)
Map Location 87,164,103 - 87,164,218
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039780
Downstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901, Grik1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478C19.T7 (MSMg01no478_c19.b1)MSMg01-478C19.TJ (MSMg01no478_c19.g1)
ACCAG559352AG559353
length671808
length of high quality
(start - end)
112 (69 - 180)117 (67 - 183)
definitionCHROMAT_FILE: MSMg01no478_c19.b1 PHD_FILE: MSMg01no478_c19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:50 2005CHROMAT_FILE: MSMg01no478_c19.g1 PHD_FILE: MSMg01no478_c19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCATAATTGCGGCCGCTATACGACTCCTATTCGAGAGGAGCGCGGAAT
TCCCAACTCTCTTCAATATGCAATGTGGACTGCTATACCTGGCTGTAATG
AAGATTCTAAGTATACTTTGCTAAGCTTGCCCTGAGACTTCTAGCTCTTA
TCCAGTAGAATACTGGTAAGAAAGCATGGCAAGACCCCTCCACAATTATT
ACCAAGGACAAATCTGGGGGCATCCTAGCTATGGGATGCCAAGGTTCCAG
GAGCTAATTTTCTTGAAACCTGGCCTCAGGACGGCTTCCAGGTTTCTAAA
CCATAAGGGCGGGTCTTTTTTTGGGGGGGGGAGGGGGACCCCTTTTCTCA
ACCCCCCCCAAAAAAAAAAAAAAAAAATTTCCCCCGGGAGGGGGGGGGAA
AAAATAAACCCATTCCCCCCCCAAAAGGGGGTTTTGGAAAAAAATTACCC
CCCGGGTTTTTTTGGAAATTTTTCTCCCCCAAAAAAGTTTTACCCCCCCC
CCCAAAAAAAAGAAATTTTTCTCAAAAAAATATTGAAAAAAAAAAAAGGG
CCCCCCCCCCCCCCTTTTTTTTTTAAAAGGGGGGGGGGGGGGAAAGAGAA
ATTCTCTTCCCTCAGAGAGGTGTGGGCTCCCCCCCTTTTTTGGGGGGGGG
GTTAAAAAAACGGGGGGGGGG
GTAGGCCTGGNGGCCGCCTGTTTCACAACAGGAGGNGACACNANANAAGT
TTCCACAAAATTCANAGATCTGCCTGCCNACTTTTTGTTTTAATAAAGCT
GGAAAGTACTATTTATAACTTAAGTTTGGGAAACCAAACAAATGGTATGG
ATAACTTTTTAAATAGTAAGAATCTCTGACATTATAGAGGAAATGTANTG
AAGTTACTCCAGAAACATGGCTGGCTATTCACTAATCAGCTATGAGTTAT
CGCTGCAACTCATAGAGGACGTTAATCATATTCCCTGGGGCNCTNNNNNN
NNGGGGGGGTGGGGGTGTGGGTGGGTTGTGGGGTGTGTGTGTGGGGTTTG
GTGGGGTGGGCTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNG
NNNNNNNCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_c19.g1 MSMg01no478_c19.g1 CHROMAT_FILE:
MSMg01no478_c19.g1 PHD_FILE: MSMg01no478_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:50 2005
         (117 letters)



>mm_chr16_87163902_87164418
          Length = 517

 Score =  195 bits (101), Expect = 6e-55
 Identities = 112/116 (96%)
 Strand = Plus / Minus

                                                                       
Query: 2   atctgcctgccnactttttgttttaataaagctggaaagtactatttataacttaagttt 61
           |||| |||||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 317 atctacctgcctactttttgttttaataaagctggaaagtattatttataccttaagttt 258

                                                                   
Query: 62  gggaaaccaaacaaatggtatggataactttttaaatagtaagaatctctgacatt 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gggaaaccaaacaaatggtatggataactttttaaatagtaagaatctctgacatt 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 117
Length of database: 517
Length adjustment: 8
Effective length of query: 109
Effective length of database: 509
Effective search space:    55481
Effective search space used:    55481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)