BAC Information

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BAC

Clone NameMSMg01-478F08
Chromosome16 (Build37)
Map Location 35,927,506 - 35,928,123
singlet/doubletsinglet
Overlap geneDtx3l
Upstream geneMylk, Ptplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217
Downstream geneParp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478F08.T7 (MSMg01no478_f08.b1)MSMg01-478F08.TJ (MSMg01no478_f08.g1)
ACCAG559474AG559475
length742743
length of high quality
(start - end)
403 (317 - 719)610 (65 - 674)
definitionCHROMAT_FILE: MSMg01no478_f08.b1 PHD_FILE: MSMg01no478_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:02 2005CHROMAT_FILE: MSMg01no478_f08.g1 PHD_FILE: MSMg01no478_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTAAACGACTCACTTTTCAGAGAGGAGCCGCGGAATTCTTTTT
TCCGGACACTTTGATTTTCCTTTAAAGATTTTTTTTTTTTGGACATTTGT
GTGTGTGAACAACTGTGAACATCAGAGGACAGCTTACAGGAGTTATTATC
ACCACGTGGGTTCTGGGAATTAAACTTAGGTTGTCAAGCATGGCAGCAAG
TGCCCTTGCTCGCTGAGCCATCTCGCTAGCCTAAGAATACGGCATTTTAT
AAGTACCCTGTCATTTTGAGATGGTTTCATGGAATCCATGTAGACCAAGA
GCCAAATGTTTTTTGAGGACAACCTTGAACTCCTAGTCCTTCTGTTCACC
CCCAGTGGTTGGGATTACAGGTCTGGGTACCACTATTCTGGCTTAGGGGA
TGCTGGGGATGAAAGTCAGGGCATCTGGCATGATGGGTGGGCATCCTGAC
AAATGGGCTACATTGCTAACTCTAAATTCATAATCTGTTGTATTAAATAT
TTCATAAATAAATCCCAACAGCAGGTTCGGTACTCGCCTCAGTGCTTTAT
GTTCCTGAATGAAAGACACACACTCAGCCTTTATATTTGAAATACGCCTT
AAGCAGCTCGATAGCTGGGCCACTGCCTAACCTCCATGCAGTGAATCCCG
AGTTATTACTTACTAATTCTATGTCCTTTCTAGGCTGCTCTGGATCCAGC
AGCAACCAGGCCTCGCTCTCCCAGCTCCTTCACATGGCAGCC
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTA
GGAAAAAAAAAAAAAAAGACAACAACGAAAAACAGGTTTGGCTGGAAAAG
ACCCATATTTCCTTCCCTACCCATAGCAAGAGAAGTTTCCAGGAGATGAG
GCAACTTTTGGTAATAAATAGAACAAAAAGACTCATATTTTTCAGGACAC
AGAGCCTAGGAGATACTGTGTGACTACTGCCTGACTCAAGATGCTAGTAG
CTCAGCAGAGGAGTGAATATATAAAAAGATATGTTCCCCAAATCTTCGGG
AGAGAGATGACTTGAGACCGTGACATTCATTTGGAAAATAGTTTCTTACC
TCAACTTGTACTGATTAGACACTGACTAAGCCTTGAATTTGGGCTCTACT
CTCCCCTGATCCATGGAACCTGTTCTAGAGGATGCACTTGCTCTGCCACA
GAAGTGCAACATAGTTTTTATATTCTTCCCTACACATTATGTTGTACTTT
TTGAATATATATTGTTTCGAGTTTTAACGGGTAAATAGCCTTGCCTTAGT
TTAATATTTCACAATAATTGCTACCTGCAATGTAGTGGCTTTTTGTTTTT
TAATCCTTTGAGTGAATCCCAGCAGTCTGTTATCTCATATATAGTCTTTC
TAATCCTTTCCCTGGACAGGAGTAAAGGAGAAAGTTCAACCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_f08.g1 MSMg01no478_f08.g1 CHROMAT_FILE:
MSMg01no478_f08.g1 PHD_FILE: MSMg01no478_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:02 2005
         (610 letters)



>mm_chr16_35927252_35928262
          Length = 1011

 Score = 1050 bits (543), Expect = 0.0
 Identities = 597/619 (96%), Gaps = 10/619 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagggctatacagagaaaccctgtctagg-aaaaaaaaaaaaaaagacaac 59
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 872 caggacagccagggctatacagagaaaccctgtctaggaaaaaaaaaaaaaaaagacaac 813

                                                                       
Query: 60  aacgaa-------aaacaggtttggctggaaaagacccatatttccttccctacccatag 112
           ||| ||       ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 812 aac-aacaacaacaaacaggtttggctggaaaagactcatatttccttccctacccatag 754

                                                                       
Query: 113 caagagaagtttccaggagatgaggcaacttttggtaataaatagaacaaaaagactcat 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 753 caagagaagtttccaggagatgaggcaacttttggtaataaatagaacaaaaagacttat 694

                                                                       
Query: 173 atttttcaggacacagagcctaggagatactgtgtgactactgcctgactcaagatgcta 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 atttttcaggacacagagcctaggagatactgtgtgactactgcctgactcaagatgcta 634

                                                                       
Query: 233 gtagctcagcagaggagtgaatatataaaaagatatgttccccaaatcttcgggagagag 292
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 633 gtagctcagcagaggagtgaatagataaaaagatatgttccccaaatcttcgggagagag 574

                                                                       
Query: 293 atgacttgagaccgtgacattcatttggaaaatag-tttcttacctcaacttgtactgat 351
           ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 573 atgacttgagaccgtgacattcatttggaaaatagttttcttaccccaacttgtactgat 514

                                                                       
Query: 352 tagacactgactaagccttgaatttgggctctactctcccctgatccatggaacctgttc 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 513 tagacactgactaagccttgaatttgggctctactctcccctgatccatggaacctgtcc 454

                                                                       
Query: 412 tagaggatgcacttgctctgccacagaagtgcaacatagtttttatattcttccctacac 471
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tagaggatgcacttgccctgccacagaagtgcaacatagtttttatattcttccctacac 394

                                                                       
Query: 472 attatgttgtactttttgaatatatattgtttcgagttttaacgggtaaatagccttgcc 531
           |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 393 attatgttgtacttttagaatatatattgtttcaagttttaacgggtaaatagccttccc 334

                                                                       
Query: 532 ttagtttaatatttcacaataattgctacctgcaatgtagtggctttttgttttttaatc 591
           |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttagtttaatatttcacagtatttgctacctgcaatgtagtggctttttgttttttaatc 274

                              
Query: 592 ctttgagtgaatcccagca 610
           ||||||| |||||||||||
Sbjct: 273 ctttgagcgaatcccagca 255


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1011
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1001
Effective search space:   600600
Effective search space used:   600600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)