BAC Information

Click to search

BAC

Clone NameMSMg01-479M18
Chromosome16 (Build37)
Map Location 74,885,855 - 74,886,096
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo2
Downstream geneLOC665042, D930038D03Rik, Rbm11, Stch, LOC546667, Samsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479M18.T7 (MSMg01no479_m18.b1)MSMg01-479M18.TJ (MSMg01no479_m18.g1)
ACCAG560590AG560591
length1,159769
length of high quality
(start - end)
---244 (72 - 315)
definitionCHROMAT_FILE: MSMg01no479_m18.b1 PHD_FILE: MSMg01no479_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:55 2005CHROMAT_FILE: MSMg01no479_m18.g1 PHD_FILE: MSMg01no479_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTCGCGTTGGTNCGNCTTTCTGCATTGGACATGTGTTTACACACAGGG
AAATTTGCGGACGGCCCCTTTTGTCCCTATCTCGCGGCGAAAGGCCGTGC
GTTTGGTACCCCATTCGGTGAACCATGAGTGGATCCATGTCCGCCGTATG
TTATTTACCCCGCTGCGGGTATTAGTAGCATACACTGCGGTAACTATCGG
CGCTTTTTTTGCCGGTCACAAATTGTCTGTCCGCCGCCCCCATTTATAGC
GTCTCCATTTCGTTCCCCATTATTTGTCTATTTGTTAAGGCGGCGGTAAG
AGTGGTGAGCCATTTTGTAAACCGGTGGTGTACGGGCGCGTGTTTACTCT
TATATACAACCCACACGCCGATGAAGAAAATTAAAACCATCGGCGCGAAG
ACATGAGTTGATCCATACGCAAGCCTCCTCCATTGCGATTTGAGCGACAC
GCACAGCGAGCGTAATGGGGCATCATAGAACGACCGCGTTCGCAGCGACA
TAGGGGGAGCAGAATAGGTACATGGTAGTAGGTGCGACCTTTTTTATACC
ATGTAGTCATTCTAATTCGTATCGCCGGCCCGAAGGAAGGGCGACAACTG
TATATAATACCATATATTTAATATACAATATGGCCCGGCGCGTAGGATAG
TGAGCACGAACGATTATTGGTGTGCGTGCGTGCGCAGTAGTTAAGAGTTA
CAATACAGTAAATACATAGGTTGCGGAAGTTTGTCTGACGCTAAGTCACC
GAGCGATAGGGGGTGTAGGGTAGGTGGGGGACCGATTAAGGAAATAGTTT
GCTGGCGCGTGAGCACAGGAGCATATCCGCAATCAGAGGCGTGCCTAATG
TATACGCTTATACTTTGACGATGGTAATTCAATACGCCTGGTGTGTGTAC
GAATAATTAATATGAGAGAGCGGAGATATATAATTATGACGGTGGGGGAG
TCGGGAGATGGAGGAGGGAGAAGTATATGTGGAGCGCGGACATTACGAGT
TTATCTGTGCCCCAGTTGTATATACAGGTATGGTAAAGTCAGCAGANTAG
CGCCCCGGCCGCTGATGCTACCGTAGAGACTCGTAATGTCTGACAGTGAG
ATATGGCATCGGAGCAGATGACGCTGCGNGTGCACGCGAGAGCGCGCGCG
CTGCTCGCG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCGACGAAATTCATCTTCCTGGAAATGAGTCCCTGATTA
GATATCCAATATCAGTAGTCAGTCAACATAAGGAACTGCTAGGGAACACT
GGAAGGGAACAGTGAAGGGACTCCGAATGCTGTACTAGATTTCCTTGTTG
ATATGTATATGTAACAGCAATGATTAAGGAGGAGGAGGCCACATCAGTTT
GGGAGGGAGGAGGTATGGGGAACATGGGAGAGGGAGGAACAAGGAGAGAG
GAAATGATATAACTATANCTTGTTTAAGAAAAACCTGGAAAAAATTAAAT
AAAGCCATAGTAAGTACCCCAGTGGGTAAGTAACAACTGAAAAAAAAATA
TGACTTAATCACTTATGCCTACCTTAAAGTTCTACCTAAAATCCCAGGTG
GAGGCAATGGGATTACCATTACTTATTCAGGAGAAAATACTCATTAACCA
AATTTTAAAACATAAAACTTTGAAGGACAATGATAAGAATTGGTGCACAG
GGAGACAGTAAGAATAAGAATCGCGACCTACTTTTTGTTTTTGTGTAGCT
GAATTGGAATCTATTATTTTTCTGCATAAACAGATTTATTTGTTTGAGGT
CCCTTCTTTTTGTTTATACACTCGTAACATGTGTATTTAAACCTGTTGCC
CTCTGAGATGCTTTAACTATAAACATGTATATAAGATATTGTTCTATGCT
GCGAGTATATTAATTAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_m18.g1 MSMg01no479_m18.g1 CHROMAT_FILE:
MSMg01no479_m18.g1 PHD_FILE: MSMg01no479_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:55 2005
         (244 letters)



>mm_chr16_74885652_74886296
          Length = 645

 Score =  406 bits (210), Expect = e-118
 Identities = 234/242 (96%), Gaps = 1/242 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   tcttcctggaaatgagtccctgattagatatccaatatc-agtagtcagtcaacataagg 62
           ||||||| ||||||||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct: 204 tcttcctagaaatgagtccctgactacatatccaatatccagtagtcagtcaacataagg 263

                                                                       
Query: 63  aactgctagggaacactggaagggaacagtgaagggactccgaatgctgtactagatttc 122
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 264 aactgctagggaacactggaagggaacagtgaagggactcagaatgctgtactagatttc 323

                                                                       
Query: 123 cttgttgatatgtatatgtaacagcaatgattaaggaggaggaggccacatcagtttggg 182
           ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 324 cttgttgatatgtatatgtaatagcaatgattaaggaggaggaggccatatcagtttggg 383

                                                                       
Query: 183 agggaggaggtatggggaacatgggagagggaggaacaaggagagaggaaatgatataac 242
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 384 agggaggaggtatggggaacatgggagagggaggaacaaggagagaggaaattatataac 443

             
Query: 243 ta 244
           ||
Sbjct: 444 ta 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 645
Length adjustment: 9
Effective length of query: 235
Effective length of database: 636
Effective search space:   149460
Effective search space used:   149460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)