BAC Information

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BAC

Clone NameMSMg01-479P21
Chromosome16 (Build37)
Map Location 88,301,757 - 88,302,378
singlet/doubletsinglet
Overlap genenone
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901, Grik1
Downstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479P21.T7 (MSMg01no479_p21.b1)MSMg01-479P21.TJ (MSMg01no479_p21.g1)
ACCAG560739AG560740
length1,323792
length of high quality
(start - end)
---623 (73 - 695)
definitionCHROMAT_FILE: MSMg01no479_p21.b1 PHD_FILE: MSMg01no479_p21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:10 2005CHROMAT_FILE: MSMg01no479_p21.g1 PHD_FILE: MSMg01no479_p21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGTTGTGTCCGGTTTTTGGTGTCGCTGCGTCGGTCCCTTTATTCTTTCT
TCTCATAACTGTCGCGTGGGGTACTACCGTCTGCATTATCTTATCTACTA
CTCTTTATATATCCACCACCGTGCCCATTACCACCACTTCTCCACGATGT
GTATCAGTATTTATACCACTATATATTCTCATTACGTTATATATGCCACC
GCCTTACTATAATTAATACCGTGTAACACCTATAATATTATTCACGACCC
GCATAACGTGACGTCACAGCGCGCGTATAATGTAGATGGCGAGAAGTAAT
ATCGACCGTGCAATGTTGCAGGCCCGGGGCGACTGTTATGTACTGTTATT
AGTGTAATTAGCTCCCCGTATTAGCGCGCCTTATCCTATTCACGGCGCTT
ATTATTACTACACAGCCTTCTCTGTATTAGACCTATTATATGATTTACTC
GTGCGTGTATGATCATAAGAAACAGCCCATCGCTCACTGTATGGATTATC
CCACCATACTAAGCACTATACCCCTCTATAATAACCGATATAATACAGAG
CAAGCTAGTCAGTAAAGCGACTATTACAAATTATGTGTAGTAATAAAGAA
CTAAACTACAATCAGATGATATCTAGAGCATATATCTATTGTTATCTTCC
CTACACCACCACTTAGCGTTTATTATATACGGATGAGTGACAATATTACA
GTTATATCTGCGCGGTTGTTTCCGAGCCGGGAGNTAATATCCCGTTCGTT
CCCGAAGCTCCGTGCGTGAACATCGATCATATATAGATATAGAATAGAAG
CAGAATATTGCCAGTACTGTTTATGCGCCCTATACCACGCATCACATGTG
TGATGTGAGACAGCTTTATCATATTATGAAGACGTTAACAAGTCGGACTA
ATGATATTACGACCGCCGACGTGTATACNCAACAGTATGAGTGACACTAT
AATACTGCCCGTCGAAGTTACGCTATATGTTACCGACGGGAGACACTGTG
TAGTTCATATATATATATATTGTATGGAATATACGCCTATCGTAGCGCAC
TCTCTACTATATAAATATATAGCATGGGCTGCTCTAGTGATATTCGTAAT
TGTTCTCGAACCGGACGGTGTATATGTTGGAATATAAGAAGAATCACAAT
ATATTCATCACACCATCGCAGCGCGGCACACTAATTATTCCCTATATCTA
TTAGACGTAGGGGAGCACATACATACGGCGTAGCGCTATGATACATATGA
CGTTGTGCATCTTCCGCTGCGGATTATTCATGCTGCGAACGCGCAGGCTG
ATGGTGCGGACTGCGATGAGCGG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTATATACATCTCCTATATCCCCCAAGAA
GAGTCCTGGTATCCTGCCTAAAACGGAAGCTGCATGGATGAAGGGACAGA
CGAATGAACAGAACGCTAAGCTAAGCAGAAGAAAAACAAGACTTGGAGAA
ATAACCCATCAACAAAACAGAACAATAAACTAGCAAACCCCACCACAGCA
GTCAGGAAGAAAAGGCTGACATTTCTTAGCCACCCATTTCTTCTCATACC
AATCGCCAAAGACACAGTCTTCTTTAAAAATCGCCTGGGGTGAGGGTGAA
GGCTTGTGGTAAAGGGTGAAGTCAGAAAAATGGGTTTCTCTATGTCATTT
TAATGATGTTGCCTAGAGCACTGAAGTATGGGGGACAAAGAAGGGAATGT
ACCTTGACGAGATAGATGGACAGAAGTCAGCACCATTACTGGGGAGGCCC
CACAGTAACAGGCAGGTTAATGTGTGCACGAGGCTTCTGCCTTTGTCATC
TAACTTTTCCTAAGGAAACATAAATGAACATCTTTTCACTTCATGCATGG
CTCCAGAAGCAGATAATCACAACAATTCTACCAAAGTCTAAGTTATTTGA
CTAAGAATCTACTGGGCTTACTGTCACAGTGTGGGGGGAAAGGTTACTTG
CAGGAAGATTAATGACTCAAAAGTAGCTTCTCACGAGAAAGCCTACCCCG
GGGTTGGTGATGACTCAAAAGTTGTATCCCTGGGACGCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_p21.g1 MSMg01no479_p21.g1 CHROMAT_FILE:
MSMg01no479_p21.g1 PHD_FILE: MSMg01no479_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:10 2005
         (623 letters)



>mm_chr16_88301557_88302578
          Length = 1022

 Score = 1120 bits (579), Expect = 0.0
 Identities = 612/623 (98%), Gaps = 1/623 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatatacatctcctatatcccccaagaagagtcctggtatcctgcctaaaacggaagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 822 tatatacatctcctatatcccccaagaagagtcctggtatcctgcttaaaacggaagctg 763

                                                                       
Query: 61  catggatgaagggacagacgaatgaacagaacgctaagctaagcagaagaaaaacaagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 catggatgaagggacagacgaatgaacagaacgctaagctaagcagaagaaaaacaagac 703

                                                                       
Query: 121 ttggagaaataacccatcaacaaaacagaacaataaactagcaaaccccaccacagcagt 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 702 ttggagaaataacccatcaacaaaacagaacaataaacaagcaaaccccaccacagcagt 643

                                                                       
Query: 181 caggaagaaaaggctgacatttcttagccacccatttcttctcataccaatcgccaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 caggaagaaaaggctgacatttcttagccacccatttcttctcataccaatcgccaaaga 583

                                                                       
Query: 241 cacagtcttctttaaaaatcgcctggggtgagggtgaaggcttgtggtaaagggtgaagt 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 cacaatcttctttaaaaatcgcctggggtgagggtgaaggcttgtggtaaagggtgaagt 523

                                                                       
Query: 301 cagaaaaatgggtttctctatgtcattttaatgatgttgcctagagcactgaagtatggg 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct: 522 cagaaaaatgggtttctctatgtcatttcaatgatgttgcctagagcactgaagtatgga 463

                                                                       
Query: 361 ggacaaagaagggaatgtaccttgacgagatagatggacagaagtcagcaccattactgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggacaaagaagggaatgtaccttgacgagatagatggacagaagtcagcaccattactgg 403

                                                                       
Query: 421 ggaggccccacagtaacaggcaggttaatgtgtgcacgaggcttctgcctttgtcatcta 480
           ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 402 ggaggccccacagtaacaggcgggttagtgtgtgcacgaggcttctgcctttgtcatcta 343

                                                                       
Query: 481 acttttcctaaggaaacataaatgaacatcttttcacttcatgcatggctccagaagcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 acttttcctaaggaaacataaatgaacatcttttcacttcatgcatggctccagaagcag 283

                                                                       
Query: 541 ataatcacaacaattctaccaaagtctaagttatttgactaagaatctactgggcttact 600
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 282 ataatcacaacaattctaccaaactctaagttatttgactaagaatctactgggcttact 223

                                  
Query: 601 gtcacagtgtggggggaaaggtt 623
           |||| ||||||| || |||||||
Sbjct: 222 gtcagagtgtggagg-aaaggtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1022
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1012
Effective search space:   620356
Effective search space used:   620356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)