BAC Information

Click to search

BAC

Clone NameMSMg01-482D23
Chromosome16 (Build37)
Map Location 46,958,667 - 46,959,353
singlet/doubletsinglet
Overlap genenone
Upstream genePlcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
Downstream geneLOC628757, LOC628776
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482D23.T7 (MSMg01no482_d23.b1)MSMg01-482D23.TJ (MSMg01no482_d23.g1)
ACCAG562458AG562459
length7281,389
length of high quality
(start - end)		692 (37 - 728)---
definitionCHROMAT_FILE: MSMg01no482_d23.b1 PHD_FILE: MSMg01no482_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:07 2005CHROMAT_FILE: MSMg01no482_d23.g1 PHD_FILE: MSMg01no482_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTT
CTTATTAACTGAATAGTGTTGAGCTGTCATATCCCTTGTGAGGGAATTGT
TTATGTTAGCATTATAGAACTAAACCAGCCATGCCTTTAAAGTTTAAAGA
CTCATTAAGATAATTTATCAGGCAAAATTTAGAGATCTCTTCATAAATAG
GTAGACTGGTAGACACTATGCCTTTAGAATTAAACTATTTTTTTATTTGC
AGGAAAAGACCATTTCCAAAGTTTTTATCATCATTTTTCCCTTTTGCTTT
GGCTATTTATTGAGGAAGTCATTAGTATGACCTCCTATTCACCTCTGCAT
TGCAGCTTCATCCAGCATCTCTCCAAGCTGATTATCTCTTTTGGATTATG
TCTTTGGAAATTTGAGGGCAAATGTAGCTAGTTCTGAACAAACTCCTTTA
TAAGCCCTGGGCCATAAAACAGTTGATGTCTGTTACACAATGCTGGCATG
TAAAGTAAATTGTCTCAGAATAATGGGTATATGTAAGAAAATGCTCAGAA
TAAAAATATCAGTTTTCTGGTATCCACTATTTGACCATGCGCTATCGACG
AGAGGCAACTGTTAAAATTCTACAGTAGGGCTTTGTCTCAAGCACTATAA
TGATAACATTCTACTGGGCAATAATTGCAATTTCATAGTTCATAATGGAT
TTCACAGTTGAGGGCGTTAGACTGTGAG

TCCACCACATGCGCACGAGACGGCACGAGAGAGAGATGGTCGCCCGCCGC
GTCTCTCTCTTACCGAGAGCGCGGCGGGCGCGACGACGATCGCTCGCATT
CTCAATACTCACTAGCAAACTCACTGCGCGACGAGGAGGATACTGATACG
TTCCATATTGATATGCAACTCCCATACCAGTTGAAACTCATGTCAAGCGC
GAGCTACTTACGACCTCAGAGCGCTCGGGCCGTCAACGCATTGACGCCGC
GCGGATGTACGTCGGCGCCAACGACCGACGACACTGATATGGTCGCGATA
GTCATGCGAGTTTGCGAAAGTCGAGAATCGAGCCGTGTAGCCAGAGTGCT
CTTTTTCGGCGCGGTATCAACATCACGCGTACGTACCGACGATATCGCGG
GCGTCGCGCGTACAATTACATCGCAGAAGCGGGGGATAGACACATCTACA
GCCCTGGCCACTGAGCACTCTTCGTACAATTGTATCATACGATAAATGTG
AGCAGAGGCAGACGATGCGCTAGAGAGGCGTCCGCGTGGCGATATGAGGA
GAATCGGCGCCTCAGGTAGCAGATTATTTACCACAGGGCAGCAGGTCGAG
ATGTGGCCTCATATGTATAGAGATAAAATGCGAGATACATCGCGATAGGA
GTCTCGGTATTTTCGCGGCGCGCGCGCTTAACCGCTCACGTTATTATTTC
CTGTAATACGCGCCGTATTGTTATGCTGGTTTGGTCGCCGTGTTAGCGCC
GTCACAACACGGGCGGCCGCGTCGTCGATAAATTCGCGTCGCGCGTATGT
TTATCGCCGTTCGTAAGCTGTGGACAGCCGAGATTGAGTACATATCCCGC
TCCGATACTCTTCGGAGTGTTATGGTCGCGCGCACGCAACATATCACGGC
NCGTAACTGGCGGCGCAGCGGTGTACAAAACTTATCGATCAACACGACGA
GATACTAAGATGTTCGNCGCTCGCCGGTCGGCATACGATGANGTTTAATT
GAATGCACACTACTGATCGCGTATCACAACGCGTCAATGCAATCTACATT
ACAGATATATTCTGATTAGGTATGTGTGCTATGATAGCNTGCATTACGCG
TACTGGCGGTATTCTGCGCCCGAGCCGAGGCACGCCGGCGATGTTNCATC
GCATATCCGTGCTGCACATGGTAACACACGTACGCGCAGACGCTACGCGG
CATGTCGCCTGCTATCTCGTACGAGGTTCGCTCTCGTCTATCACGACCGC
ACACGGCGAGATCGCACTACATGTCACAGTCTGTCGCGGATCGACGACGC
CTACATCAGTAGACTAGCACGCGTGTTCTATAGGCCGCCTCGCGACTATA
AATAGTANGTGAACGCTCGCGCATAGTCGCATTATCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_d23.b1 MSMg01no482_d23.b1 CHROMAT_FILE:
MSMg01no482_d23.b1 PHD_FILE: MSMg01no482_d23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:07 2005
         (692 letters)



>mm_chr16_46958463_46959553
          Length = 1091

 Score = 1268 bits (656), Expect = 0.0
 Identities = 680/688 (98%), Gaps = 1/688 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttcttattaactgaatagtgttgagctgtcatatcccttgtgagggaattgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttcttattaactgaatagtgttgagctgtcatatcccttgtgagggaattgt 264

                                                                       
Query: 65  ttatgttagcattatagaactaaaccagccatgcctttaaagtttaaagactcattaaga 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 ttatgttagcattatagaactaaaacagccatgcctttaaagtttaaagactcattaaga 324

                                                                       
Query: 125 taatttatcaggcaaaatttagagatctcttcataaataggtagactggtagacactatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 taatttatcaggcaaaatttagagatctcttcataaataggtagactggtagacagtatg 384

                                                                       
Query: 185 cctttagaattaaactatttttttatttgcaggaaaagaccatttccaaagtttttatca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctttagaattaaactatttttttatttgcaggaaaagaccatttccaaagtttttatca 444

                                                                       
Query: 245 tcatttttcccttttgctttggctatttattgaggaagtcattagtatgacctcctattc 304
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 445 tcatttttcccttttgctttggctatttattgaggaagtcattagcatgacctcctattc 504

                                                                       
Query: 305 acctctgcattgcagcttcatccagcatctctccaagctgattatctcttttggattatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||
Sbjct: 505 acctctgcattgcagcttcatccagcatctctccaagctgattatctcttttgaaa-atg 563

                                                                       
Query: 365 tctttggaaatttgagggcaaatgtagctagttctgaacaaactcctttataagccctgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tctttggaaatttgagggcaaatgtagctagttctgaacaaactcctttataagccctgg 623

                                                                       
Query: 425 gccataaaacagttgatgtctgttacacaatgctggcatgtaaagtaaattgtctcagaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gccataaaacagttgatgtctgttacacaatgctggcatgtaaagtaaattgtctcagaa 683

                                                                       
Query: 485 taatgggtatatgtaagaaaatgctcagaataaaaatatcagttttctggtatccactat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taatgggtatatgtaagaaaatgctcagaataaaaatatcagttttctggtatccactat 743

                                                                       
Query: 545 ttgaccatgcgctatcgacgagaggcaactgttaaaattctacagtagggctttgtctca 604
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttgaccatgcgctatcgactagaggcaactgttaaaattctacagtagggctttgtctca 803

                                                                       
Query: 605 agcactataatgataacattctactgggcaataattgcaatttcatagttcataatggat 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 agcactataatgataacattctactgggcaataattgcaatttcatagttcataatggat 863

                                       
Query: 665 ttcacagttgagggcgttagactgtgag 692
           |||||||||||| |||||||||||||||
Sbjct: 864 ttcacagttgagagcgttagactgtgag 891


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1091
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1081
Effective search space:   737242
Effective search space used:   737242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |