BAC Information

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BAC

Clone NameMSMg01-482H19
Chromosome16 (Build37)
Map Location 39,004,860 - 39,005,179
singlet/doubletsinglet
Overlap geneIgsf11
Upstream geneGpr156, LOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik
Downstream geneLOC667400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482H19.T7 (MSMg01no482_h19.b1)MSMg01-482H19.TJ (MSMg01no482_h19.g1)
ACCAG562641AG562642
length691758
length of high quality
(start - end)		655 (37 - 691)684 (75 - 758)
definitionCHROMAT_FILE: MSMg01no482_h19.b1 PHD_FILE: MSMg01no482_h19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:24 2005CHROMAT_FILE: MSMg01no482_h19.g1 PHD_FILE: MSMg01no482_h19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGA
TCTTTCCAAAACTTTTATCATGAATGGGTGTTGGATGTTGTCAAATGCTT
TCTCAGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTT
ATATACTGGATTACATTGATGGATTTCCGTATATTAAACCATCCCTGCAT
CCCTGGGATGAAACCTACTTGGTCAGGATGGATGATTGTTTTGATTTGTT
CTTGGATTCGGTTAGCAAGAACTTTATTGAGGATTTTTGCATCGATATTC
ATAAGGGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTCTTTTTGTCG
TTTAGGTATCAGAGTAATTGTGGCTTCATAGAATGAGTTGGGTAGAGTAC
CTTCCGTTTCTATTTTGTGGAATAGTTTGTGAAGAACTGGAATTAGGTCT
TCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCTGGTCCTGGGCT
TTTTTTTGGCTGGGAGACTATTAATAACTGCTTCTATTTCTTTAGGGGAT
ATGGGACTGTTTAGATGGTCAACTTGATCCTGATTCAACTTTGGTAGCTG
TTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCAGTTGTGTTG
AGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGGATT

CATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATTTAAAACATAATCAAATTTTAAA
TGAATATGCATATCTGTGGTGGTTTCCATAAAAATAGCCCCAGAGGTTCA
TATATTTGAATTCTTAGTCACTAAGGAGTGGTATTATTTGGGAAGGATCA
GGAGGTGTGGCCTTGTTTGAGTAGGTGTGCCCTTGCTGGAGGAAGTACGT
ATCTGGGGGTGGGCTTTGAGGTTTTAAAAGCTCATGCCAGGGCCAGTCTC
CCCTGTTCTCCCCTCCTCTCTGTTTTCAGGTCAGCTGCTGTTTTAGCACC
AAGCATGCCACCATACCCATGGCCATGATGATAATGGACTGGCTGCCTGA
AAGTGTAAGCAGGCCCCTAATTAAATGCTTTCTTTTATTAGAGTTGTACC
ATCATGGTGCCTCTCAATAGCACTAGAACACTAACCATGGCAATGTCTAA
ACCACAACACCAGTGCACATCTACTGGAATGGCTACCATGAAAACCACAG
CAAGTGCTCATTAGGATTTAGAGAAAAGGGAGGCTCATATATTGCTAGTA
AGAATATAAAAATGGAACAGGTACCTTGGAAAACAGTTATACATTATAGT
TATAACTATTATATGTATAACATAAACATATGACAACTTACTGCCATTAT
CTTAGAACTCTAGCCGAAGAAAATGGAAATATCTATTATATGAATACAGT
CCATAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_h19.g1 MSMg01no482_h19.g1 CHROMAT_FILE:
MSMg01no482_h19.g1 PHD_FILE: MSMg01no482_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:24 2005
         (684 letters)



>mm_chr16_39004096_39005179
          Length = 1084

 Score =  619 bits (320), Expect = 0.0
 Identities = 320/320 (100%)
 Strand = Plus / Minus

                                                                        
Query: 365  tagagttgtaccatcatggtgcctctcaatagcactagaacactaaccatggcaatgtct 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 tagagttgtaccatcatggtgcctctcaatagcactagaacactaaccatggcaatgtct 1025

                                                                        
Query: 425  aaaccacaacaccagtgcacatctactggaatggctaccatgaaaaccacagcaagtgct 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 aaaccacaacaccagtgcacatctactggaatggctaccatgaaaaccacagcaagtgct 965

                                                                        
Query: 485  cattaggatttagagaaaagggaggctcatatattgctagtaagaatataaaaatggaac 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964  cattaggatttagagaaaagggaggctcatatattgctagtaagaatataaaaatggaac 905

                                                                        
Query: 545  aggtaccttggaaaacagttatacattatagttataactattatatgtataacataaaca 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904  aggtaccttggaaaacagttatacattatagttataactattatatgtataacataaaca 845

                                                                        
Query: 605  tatgacaacttactgccattatcttagaactctagccgaagaaaatggaaatatctatta 664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844  tatgacaacttactgccattatcttagaactctagccgaagaaaatggaaatatctatta 785

                                
Query: 665  tatgaatacagtccataaat 684
            ||||||||||||||||||||
Sbjct: 784  tatgaatacagtccataaat 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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