BAC Information

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BAC

Clone NameMSMg01-482K10
Chromosome16 (Build37)
Map Location 88,334,698 - 88,335,261
singlet/doubletsinglet
Overlap genenone
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901, Grik1
Downstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482K10.T7 (MSMg01no482_k10.b1)MSMg01-482K10.TJ (MSMg01no482_k10.g1)
ACCAG562766AG562767
length729709
length of high quality
(start - end)
568 (73 - 640)333 (50 - 382)
definitionCHROMAT_FILE: MSMg01no482_k10.b1 PHD_FILE: MSMg01no482_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:36 2005CHROMAT_FILE: MSMg01no482_k10.g1 PHD_FILE: MSMg01no482_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXAATCCGAACGAGAGCCGCNGGA
ATCCATATTTCCAGAACGCGGAAGTAGAAAGCGAACAGAGCCAAACACTG
TGAAGCTTGTTTTATGAGGAACGTAATACTGTCCTCAAGATGGAAGGATT
CACCAAGATCCTACATTTCTCTATATCATACTAACCTTTAAGTTTCAACA
CCTGACTTTGGGGGAGGAGGAATTCAGACACATGAATTCAGGTCTATGTC
AGAAGAAGAGAAAAATTCTCTCTTCAGCTAGGCTACAGCCTCCTGTTTCA
TCTCAACACCTTTGTTATGAGCTTGTAAAAGGTAGCCATTGGTACTCATC
TGTTCAAGTGCCATTAAGACTGGCACAGGAAAAGCCAAGTTCACTGCAAG
TTTCTAGAGCTGTTTATTCTTCAAAACTGTTTTGTTATTTACCGAAGTCC
AAGGAGTTGAGGTAACCCAGACGCAAAAGCACATGCATGACAGGAACCTA
GCTTAACTTCTGAGAGGCTCCACACAGCAGTCATTGGAAGGAGATGCAGA
GACTCATATCCAAACGTTAGATAGAACTGGGGAGGAAGACTGAGGGAGGA
AGACTGAGGGAGGAAGACTGAGGCACTATAGAGGACAGGGACTCCACAGG
AAGACCAACAGAGTCAACTAACCTGGTCCTTTGGATGCTTCCAGAAACTG
AACCACCAACAAAAAAATGAGCCAGGACN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
GAAAGAAGCTGAGGAGAAGGGTAATTCTGTAGGAGGATCAGCAGTCTCAG
TTAATCTGGACCCCTGAGATCTCTCAAACACTGGACCACCAAACAGACAG
CATACACCAGCTGATGTGAGGCCCTGAACACACAAAGTAGAGGACTGCCT
GGTCTGTGTTCATTCAGAGATGATGCACCTAACCCTCCAGGAGGCTCCAG
GAAGTTTAGAGGTCAGGTGGGGTGGGGTTAGAGGCATCCATATGGATACA
GGGGGTGGGGAGAAGGTATGGGATGTGGAACAGTACGAGGGTGGAACTGA
GTGGGTGAGGGGGAATAAAATATGGAATGTAAAAAATAACTCACCTTTAA
AAAATACTATATTTAATTTTTAATATATACTCGGGAAGATATTTTATATG
TGACGCTCCTGTTATTTTTCTGAGCATTCTTTCCATGCAATCTTGACCCT
TTGCTTTTATTTCATCTTAATGATGCACAATTTACTTCTTTATAACCTTT
TGTTAATTTCACATGACTGCTTTTTCAAATGTATATGACCATTCCTTTTT
AACTTTTCCTTTATTATTCGACCATTTTTATTCCTCGCAATCTTACCCAT
TTTATCGCTCAATTTTGCGGCTTGTACCCTTTTTTACCTGCTTTTTCTCG
CCCATGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_k10.b1 MSMg01no482_k10.b1 CHROMAT_FILE:
MSMg01no482_k10.b1 PHD_FILE: MSMg01no482_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:36 2005
         (568 letters)



>mm_chr16_88334474_88335441
          Length = 968

 Score =  959 bits (496), Expect = 0.0
 Identities = 541/564 (95%), Gaps = 13/564 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtagaaagcgaacagagccaaacactgtgaagcttgttttatgaggaacgtaatactgt 60
           ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 788 agtagaaagtgaacagagccaaacactgtgaagcttgttttctgaggaacgtaatactgt 729

                                                                       
Query: 61  cctcaagatggaaggattcaccaagatcctacatttctctatatcatactaacctttaag 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ccacaagatggaaggattcaccaagatcctacatttctctatatcatactaacctttaag 669

                                                                       
Query: 121 tttcaacacctgactttgggggaggaggaattcagacacatgaattcaggtctatgtcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tttcaacacctgactttgggggaggaggaattcagacacatgaattcaggtctatgtcag 609

                                                                       
Query: 181 aagaagagaa-------------aaattctctcttcagctaggctacagcctcctgtttc 227
           ||||||||||             |||||||||||||||||||||||||||||||||||||
Sbjct: 608 aagaagagaaaaagatggtcagtaaattctctcttcagctaggctacagcctcctgtttc 549

                                                                       
Query: 228 atctcaacacctttgttatgagcttgtaaaaggtagccattggtactcatctgttcaagt 287
           |||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 548 atctcaacacctttgccatgagcttgtaaaaggtggccattggtactcatctgttcaagg 489

                                                                       
Query: 288 gccattaagactggcacaggaaaagccaagttcactgcaagtttctagagctgtttattc 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gccattaagactggcacaggaaaagccaagttcactgcaagtttctagagctgtttattc 429

                                                                       
Query: 348 ttcaaaactgttttgttatttaccgaagtccaaggagttgaggtaacccagacgcaaaag 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttcaaaactgttttgttatttaccgaagtccaaggagttgaggtaacccagacgcaaaag 369

                                                                       
Query: 408 cacatgcatgacaggaacctagcttaacttctgagaggctccacacagcagtcattggaa 467
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 368 cacatgcatgacaggaacctagcttaacctctgagaggctccacacagcagtcattggaa 309

                                                                       
Query: 468 ggagatgcagagactcatatccaaacgttagatagaactggggaggaagactgagggagg 527
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 308 ggagatgcagagactcatatccaaacgttagatagaactggggagaaagactgagggagg 249

                                   
Query: 528 aagactgagggaggaagactgagg 551
           ||| ||||||||||||||||||||
Sbjct: 248 aaggctgagggaggaagactgagg 225


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)