Query= MSMg01no483_g21.b1 MSMg01no483_g21.b1 CHROMAT_FILE:
MSMg01no483_g21.b1 PHD_FILE: MSMg01no483_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:38 2005
(563 letters)
>mm_chr16_5467652_5468622
Length = 971
Score = 973 bits (503), Expect = 0.0
Identities = 551/579 (95%), Gaps = 20/579 (3%)
Strand = Plus / Plus
Query: 5 gaattctctggttcgccagatcagtctagtccctcaaccagagccgagttcatggggcca 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgggaggccagatcagtctagtccctcaaccagagccgagttcatggggcca 264
Query: 65 tagcgccccctgcaggctgtgagtagaggtacagctacacaagacttcatgactag---- 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagcgccccctgcaggctgtgagtagaggtacagctacacaagacttcatgactagtgtt 324
Query: 121 ----tgtttgtttttgttttgacttggttttcttcttttaaatccaaaacaaatatttgt 176
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 tgtttgtttgtttttgttttgacttgtttttcttcttttaaatccaaaacaaatatttgt 384
Query: 177 ataggtaacgaaccccaagaggacagcctaaaagatttccatagaacagatgcacactgg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataggtaacgaaccccaagaggacagcctaaaagatttccatagaacagatgcacactgg 444
Query: 237 acacaagaactcttgcctagcagtggatcccttgttccctgggatccatagaagtttggt 296
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 acacaagaactcttgcctagcagtgggtcccttgttccctgggatccatagaagtttggt 504
Query: 297 tcttggacagccataggtacacagacccaaagatgtgccagtctcttttatagaaagttt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcttggacagccataggtacacagacccaaagatgtgccagtctcttttatagaaagttt 564
Query: 357 cagagttccaaataatccccacatacccaccatttcctacaccatctctagatgctgtat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagagttccaaataatccccacatacccaccatttcctacaccatctctagatgctgtat 624
Query: 417 aactcctagcacagcaatgtgaatgcctg------------tctgtctgtctgtctgtct 464
||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 625 aactcctagcacagcaatgtgaatgcctgcctgcctgcctgtctgtctgtctgtctgtct 684
Query: 465 gtctgtgatggattgtttagtgaatactgatgattcaacaatttaattctatataagtaa 524
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 685 gtctgtgatggattgtttagtgaatactgatgattcaacaatttaagtctatataagtaa 744
Query: 525 acaagtatatttttagtgtgtggctggtttcatcaacag 563
|||||||||||| |||||||||||||||||||||||||
Sbjct: 745 gcaagtatattttcagtgtgtggctggtttcatcaacag 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 971
Length adjustment: 10
Effective length of query: 553
Effective length of database: 961
Effective search space: 531433
Effective search space used: 531433
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_g21.g1 MSMg01no483_g21.g1 CHROMAT_FILE:
MSMg01no483_g21.g1 PHD_FILE: MSMg01no483_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:38 2005
(542 letters)
>mm_chr16_5628362_5629303
Length = 942
Score = 1048 bits (542), Expect = 0.0
Identities = 542/542 (100%)
Strand = Plus / Minus
Query: 1 tcctctgttaggtatttttcatagcaatacaaatgtgatgggattgttacttgtccactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tcctctgttaggtatttttcatagcaatacaaatgtgatgggattgttacttgtccactg 683
Query: 61 agctgttcctactcataaaagctaaggatgccagagaatgcccccaaacctcatattatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 agctgttcctactcataaaagctaaggatgccagagaatgcccccaaacctcatattatg 623
Query: 121 caggtgccatttggataattccctggtaacagggcttcagtgtttggagcctggatgtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 caggtgccatttggataattccctggtaacagggcttcagtgtttggagcctggatgtca 563
Query: 181 gcacgacatggcatttaccttctcggctactctttctctctgagctacttgtggataact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gcacgacatggcatttaccttctcggctactctttctctctgagctacttgtggataact 503
Query: 241 ggtgtatgtgtaggagttggcaggtagagtttgaacttcctccaggatcaactgcctctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggtgtatgtgtaggagttggcaggtagagtttgaacttcctccaggatcaactgcctctg 443
Query: 301 tgaaccgggttctgagactcactatacaagacatgaaatgctttgcctttggaagaacac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgaaccgggttctgagactcactatacaagacatgaaatgctttgcctttggaagaacac 383
Query: 361 attcccttcctccaggttctcaaagaacggctgacttggaaagtcaaacacatcagaggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 attcccttcctccaggttctcaaagaacggctgacttggaaagtcaaacacatcagaggc 323
Query: 421 agtaataaccaaagctatttatttccccccaaacagctgccgctgagaggttccactgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agtaataaccaaagctatttatttccccccaaacagctgccgctgagaggttccactgca 263
Query: 481 tacagccaaacagcctgtgatccaccttcccgtctctgtttaaatggagcttggctgact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tacagccaaacagcctgtgatccaccttcccgtctctgtttaaatggagcttggctgact 203
Query: 541 ta 542
||
Sbjct: 202 ta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|