BAC Information

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BAC

Clone NameMSMg01-483G21
Chromosome16 (Build37)
Map Location 5,467,856 - 5,629,103
singlet/doubletdoublet
Overlap genenone
Upstream geneSrl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
Downstream geneLOC100042436, A2bp1, LOC100042445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483G21.T7 (MSMg01no483_g21.b1)MSMg01-483G21.TJ (MSMg01no483_g21.g1)
ACCAG563360AG563361
length763770
length of high quality
(start - end)
563 (54 - 616)542 (81 - 622)
definitionCHROMAT_FILE: MSMg01no483_g21.b1 PHD_FILE: MSMg01no483_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:38 2005CHROMAT_FILE: MSMg01no483_g21.g1 PHD_FILE: MSMg01no483_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,467,856 - 5,468,434)(5,628,562 - 5,629,103)
sequence
CCATTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCTGGTTCGCCAGATCAGTCTAGTCCCTCAACCAGAG
CCGAGTTCATGGGGCCATAGCGCCCCCTGCAGGCTGTGAGTAGAGGTACA
GCTACACAAGACTTCATGACTAGTGTTTGTTTTTGTTTTGACTTGGTTTT
CTTCTTTTAAATCCAAAACAAATATTTGTATAGGTAACGAACCCCAAGAG
GACAGCCTAAAAGATTTCCATAGAACAGATGCACACTGGACACAAGAACT
CTTGCCTAGCAGTGGATCCCTTGTTCCCTGGGATCCATAGAAGTTTGGTT
CTTGGACAGCCATAGGTACACAGACCCAAAGATGTGCCAGTCTCTTTTAT
AGAAAGTTTCAGAGTTCCAAATAATCCCCACATACCCACCATTTCCTACA
CCATCTCTAGATGCTGTATAACTCCTAGCACAGCAATGTGAATGCCTGTC
TGTCTGTCTGTCTGTCTGTCTGTGATGGATTGTTTAGTGAATACTGATGA
TTCAACAATTTAATTCTATATAAGTAAACAAGTATATTTTTAGTGTGTGG
CTGGTTTCATCAACAGATGTAGGATTGGAGGCTCTGAACCTGTGGATTTG
GAGGTCAGTGGTGTTTTTTCAGAGCCATGGGCACTTTACCCTTGCCCGTC
TTCCTATCCATGGAGTCACCATCGATGTGTGCTTTCTACCTGAACTTCTT
CATGAGAGATGGA
AATTTTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGTTAGGTATTTTTC
ATAGCAATACAAATGTGATGGGATTGTTACTTGTCCACTGAGCTGTTCCT
ACTCATAAAAGCTAAGGATGCCAGAGAATGCCCCCAAACCTCATATTATG
CAGGTGCCATTTGGATAATTCCCTGGTAACAGGGCTTCAGTGTTTGGAGC
CTGGATGTCAGCACGACATGGCATTTACCTTCTCGGCTACTCTTTCTCTC
TGAGCTACTTGTGGATAACTGGTGTATGTGTAGGAGTTGGCAGGTAGAGT
TTGAACTTCCTCCAGGATCAACTGCCTCTGTGAACCGGGTTCTGAGACTC
ACTATACAAGACATGAAATGCTTTGCCTTTGGAAGAACACATTCCCTTCC
TCCAGGTTCTCAAAGAACGGCTGACTTGGAAAGTCAAACACATCAGAGGC
AGTAATAACCAAAGCTATTTATTTCCCCCCAAACAGCTGCCGCTGAGAGG
TTCCACTGCATACAGCCAAACAGCCTGTGATCCACCTTCCCGTCTCTGTT
TAAATGGAGCTTGGCTGACTTANAGGAGGTTACATGAGTCCCAGTGATGG
GGAACAGGAGGGGAAACGACTCCATGATGAAATTCCCGTTGTCTAGATTT
TAAAGCCTCCAAAAAGACCCAAACCTATGAGTGTGCCCCGGGGATGTCTG
CATTTCCTCCCTCTGGAGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_g21.b1 MSMg01no483_g21.b1 CHROMAT_FILE:
MSMg01no483_g21.b1 PHD_FILE: MSMg01no483_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:38 2005
         (563 letters)



>mm_chr16_5467652_5468622
          Length = 971

 Score =  973 bits (503), Expect = 0.0
 Identities = 551/579 (95%), Gaps = 20/579 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctggttcgccagatcagtctagtccctcaaccagagccgagttcatggggcca 64
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgggaggccagatcagtctagtccctcaaccagagccgagttcatggggcca 264

                                                                       
Query: 65  tagcgccccctgcaggctgtgagtagaggtacagctacacaagacttcatgactag---- 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 265 tagcgccccctgcaggctgtgagtagaggtacagctacacaagacttcatgactagtgtt 324

                                                                       
Query: 121 ----tgtttgtttttgttttgacttggttttcttcttttaaatccaaaacaaatatttgt 176
               |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 tgtttgtttgtttttgttttgacttgtttttcttcttttaaatccaaaacaaatatttgt 384

                                                                       
Query: 177 ataggtaacgaaccccaagaggacagcctaaaagatttccatagaacagatgcacactgg 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataggtaacgaaccccaagaggacagcctaaaagatttccatagaacagatgcacactgg 444

                                                                       
Query: 237 acacaagaactcttgcctagcagtggatcccttgttccctgggatccatagaagtttggt 296
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 acacaagaactcttgcctagcagtgggtcccttgttccctgggatccatagaagtttggt 504

                                                                       
Query: 297 tcttggacagccataggtacacagacccaaagatgtgccagtctcttttatagaaagttt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcttggacagccataggtacacagacccaaagatgtgccagtctcttttatagaaagttt 564

                                                                       
Query: 357 cagagttccaaataatccccacatacccaccatttcctacaccatctctagatgctgtat 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagagttccaaataatccccacatacccaccatttcctacaccatctctagatgctgtat 624

                                                                       
Query: 417 aactcctagcacagcaatgtgaatgcctg------------tctgtctgtctgtctgtct 464
           |||||||||||||||||||||||||||||            |||||||||||||||||||
Sbjct: 625 aactcctagcacagcaatgtgaatgcctgcctgcctgcctgtctgtctgtctgtctgtct 684

                                                                       
Query: 465 gtctgtgatggattgtttagtgaatactgatgattcaacaatttaattctatataagtaa 524
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 685 gtctgtgatggattgtttagtgaatactgatgattcaacaatttaagtctatataagtaa 744

                                                  
Query: 525 acaagtatatttttagtgtgtggctggtttcatcaacag 563
            |||||||||||| |||||||||||||||||||||||||
Sbjct: 745 gcaagtatattttcagtgtgtggctggtttcatcaacag 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 971
Length adjustment: 10
Effective length of query: 553
Effective length of database: 961
Effective search space:   531433
Effective search space used:   531433
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no483_g21.g1 MSMg01no483_g21.g1 CHROMAT_FILE:
MSMg01no483_g21.g1 PHD_FILE: MSMg01no483_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:38 2005
         (542 letters)



>mm_chr16_5628362_5629303
          Length = 942

 Score = 1048 bits (542), Expect = 0.0
 Identities = 542/542 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctctgttaggtatttttcatagcaatacaaatgtgatgggattgttacttgtccactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tcctctgttaggtatttttcatagcaatacaaatgtgatgggattgttacttgtccactg 683

                                                                       
Query: 61  agctgttcctactcataaaagctaaggatgccagagaatgcccccaaacctcatattatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 agctgttcctactcataaaagctaaggatgccagagaatgcccccaaacctcatattatg 623

                                                                       
Query: 121 caggtgccatttggataattccctggtaacagggcttcagtgtttggagcctggatgtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 caggtgccatttggataattccctggtaacagggcttcagtgtttggagcctggatgtca 563

                                                                       
Query: 181 gcacgacatggcatttaccttctcggctactctttctctctgagctacttgtggataact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gcacgacatggcatttaccttctcggctactctttctctctgagctacttgtggataact 503

                                                                       
Query: 241 ggtgtatgtgtaggagttggcaggtagagtttgaacttcctccaggatcaactgcctctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggtgtatgtgtaggagttggcaggtagagtttgaacttcctccaggatcaactgcctctg 443

                                                                       
Query: 301 tgaaccgggttctgagactcactatacaagacatgaaatgctttgcctttggaagaacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgaaccgggttctgagactcactatacaagacatgaaatgctttgcctttggaagaacac 383

                                                                       
Query: 361 attcccttcctccaggttctcaaagaacggctgacttggaaagtcaaacacatcagaggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 attcccttcctccaggttctcaaagaacggctgacttggaaagtcaaacacatcagaggc 323

                                                                       
Query: 421 agtaataaccaaagctatttatttccccccaaacagctgccgctgagaggttccactgca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agtaataaccaaagctatttatttccccccaaacagctgccgctgagaggttccactgca 263

                                                                       
Query: 481 tacagccaaacagcctgtgatccaccttcccgtctctgtttaaatggagcttggctgact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tacagccaaacagcctgtgatccaccttcccgtctctgtttaaatggagcttggctgact 203

             
Query: 541 ta 542
           ||
Sbjct: 202 ta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)