BAC Information

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BAC

Clone NameMSMg01-483M22
Chromosome16 (Build37)
Map Location 28,821,788 - 28,991,477
singlet/doubletdoublet
Overlap gene1600021P15Rik, EG666717
Upstream geneFgf12
Downstream geneHrasls, Atp13a5, Atp13a4, Opa1, Gm1968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483M22.T7 (MSMg01no483_m22.b1)MSMg01-483M22.TJ (MSMg01no483_m22.g1)
ACCAG563647AG563648
length764764
length of high quality
(start - end)		598 (74 - 671)562 (85 - 646)
definitionCHROMAT_FILE: MSMg01no483_m22.b1 PHD_FILE: MSMg01no483_m22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:09 2005CHROMAT_FILE: MSMg01no483_m22.g1 PHD_FILE: MSMg01no483_m22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,990,993 - 28,991,477)(28,821,788 - 28,822,345)
sequence
CCCTTATTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCAAGATCTTGCCAGGCTGGAGAGAAGAAGTTGAACC
TTTAATCTGGCCAAAGACTAGGAGACTTTCTTCAAAGGTGTTTTTGGGTC
ACAGGCAGGAAGGGCTGATTGGTCATAACACAGTACCTGAATGGGACTTA
TATGCTGAATCATACAGTCCTGCAGGAAACTTTCTGATGGCTCATCACTG
CCTAGATAAAGTCAGGCACCCGTGTTTAGAGATCCAGATAAGATCAGGTA
GAAAAGAGGAAGGCCTGTTGAGAAAGAGAGTCCTCCCTTTTGCACTGAGC
TCGGAGCTTATCTGGACCTGGTGACCTATGACATTCCAACAAGATTCAGG
GGTACTAAAGGAGCCTTTGGCTGCATTCACCTCATCTTCCCACTAACTCC
AGTAAGAAACCTGTCTTAAGATTCTCCTGTGCGTGTTTGATCTGGTTTCC
AAAACAGAGCTTTTAATTCAAGAACAGGGGGAGTTGATGGTAAAGGTAGC
TGGATGCCTCAGAATCACAAGAAGTCTCACTCCGGAAGTAGAAGAAGCTG
AGGCTCCCTCCCAGCCTCCTTCTTCCACCAGCACTGGGTGCCACGCTGCA
CTGTACCTTCAGCTGAACTCGAGAGATCGCANGTGCAGCATGACATTGCA
GCAGCTGCTGTAGCCACCTGCAGCTTGAACAGGTTCTTGGCTGCCTCTCC
TGTTTGGATGACAG

NNTTTTTACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGTCCTCTACAGAAG
CAGCATAGGCTCGTACGCACTGAGCCATCTCCCCAGCCCCAAAATTTGAC
ATTTCTGAGACAGACAAATGGGTTCAAGCCCTGATTCTTCTTCATACCTA
ACTATAAGTTTGAACAAGGTACCTAATTTAACACTGAGACTTCCTGTGTT
TACAGTTTTGTGATAATTAATCGCAAATGCAAAGAATCAATCAAGAACTG
GTGTGATAAGTGTCCCCGAGGTGCCTGCGCTGCCCACCAGACATACTGCT
GCAACTTAATGAGATTCTTAACAATAAAGTGCTGGGAGAATGGAGCGTTC
AAGCTTGTAAAGAAGCAGGTTTATAGATCTAAACCCGAGATTTCTTTGGA
GATTTGAGGCAATTTGAGTCAGCTAGTAAAAGCCAGTAAGGAAGAAAACG
GCTCCTCCAATCCCCCCATGTTACAGACATGAACGCAAAATAAAGTCTTA
AGGTTTACTTTATGTTCTCCCATTTAACCCTCTTTCCCTTAACTAAACGA
TGAAGTTGACAGCAAAGAAAACTAGATCTCTGAATCTTTACTAAAGCCCG
AATAGCAATCCATCAATCCNAGGCAGACATGGGAGCGACCCAGAGAACAG
GTTCCCATCTCCGATGCCACACACCAGGCGACTCTCATCTACAGNTATCT
CCAGCTCTAGGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_m22.b1 MSMg01no483_m22.b1 CHROMAT_FILE:
MSMg01no483_m22.b1 PHD_FILE: MSMg01no483_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:09 2005
         (598 letters)



>mm_chr16_28990480_28991477
          Length = 998

 Score =  814 bits (421), Expect = 0.0
 Identities = 469/485 (96%)
 Strand = Plus / Minus

                                                                       
Query: 114 ctgaatgggacttatatgctgaatcatacagtcctgcaggaaactttctgatggctcatc 173
           |||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 998 ctgaataggacttatatgctgaatcatgcagtcctgcaggaaactttctgctggctcatc 939

                                                                       
Query: 174 actgcctagataaagtcaggcacccgtgtttagagatccagataagatcaggtagaaaag 233
           ||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 938 accacctagataaagtcaggcacgcgtgtttagagatccagataagatcaggtagaaaag 879

                                                                       
Query: 234 aggaaggcctgttgagaaagagagtcctcccttttgcactgagctcggagcttatctgga 293
           |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 878 aggagggcctgttgagaaagagagtcctcccttttgcactgagcttggagcttatctgga 819

                                                                       
Query: 294 cctggtgacctatgacattccaacaagattcaggggtactaaaggagcctttggctgcat 353
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 cctggtgacctatgacatttcaacaagattcaggggtactaaaggagcctttggctgcat 759

                                                                       
Query: 354 tcacctcatcttcccactaactccagtaagaaacctgtcttaagattctcctgtgcgtgt 413
           |||| |||||||| ||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 758 tcacttcatcttctcactaactccagtgagaaacctgtcttaagattctcctgtgcatgt 699

                                                                       
Query: 414 ttgatctggtttccaaaacagagcttttaattcaagaacagggggagttgatggtaaagg 473
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ttaatctggtttccaaaacagagcttttaattcaagaacagggggagttgatggtaaagg 639

                                                                       
Query: 474 tagctggatgcctcagaatcacaagaagtctcactccggaagtagaagaagctgaggctc 533
           |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 638 tagctggatgtctcagaatcacaagaagtctcactccagaagtagaagaagctgaggctc 579

                                                                       
Query: 534 cctcccagcctccttcttccaccagcactgggtgccacgctgcactgtaccttcagctga 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cctcccagcctccttcttccaccagcactgggtgccacgctgcactgtaccttcagctga 519

                
Query: 594 actcg 598
           |||||
Sbjct: 518 actcg 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no483_m22.g1 MSMg01no483_m22.g1 CHROMAT_FILE:
MSMg01no483_m22.g1 PHD_FILE: MSMg01no483_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:09 2005
         (562 letters)



>mm_chr16_28821584_28822545
          Length = 962

 Score = 1048 bits (542), Expect = 0.0
 Identities = 554/558 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   cctctacagaagcagcataggctcgtacgcactgagccatctccccagccccaaaatttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 cctctacagaagcagcataggctcgtacgcactgagccatctccccagccccaaaatttg 264

                                                                       
Query: 65  acatttctgagacagacaaatgggttcaagccctgattcttcttcatacctaactataag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acatttctgagacagacaaatgggttcaagccctgattcttcttcatacctaactataag 324

                                                                       
Query: 125 tttgaacaaggtacctaatttaacactgagacttcctgtgtttacagttttgtgataatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttgaacaaggtacctaatttaacactgagacttcctgtgtttacagttttgtgataatt 384

                                                                       
Query: 185 aatcgcaaatgcaaagaatcaatcaagaactggtgtgataagtgtccccgaggtgcctgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatcgcaaatgcaaagaatcaatcaagaactggtgtgataagtgtccccgaggtgcctgc 444

                                                                       
Query: 245 gctgcccaccagacatactgctgcaacttaatgagattcttaacaataaagtgctgggag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctgcccaccagacatactgctgcaacttaatgagattcttaacaataaagtgctgggag 504

                                                                       
Query: 305 aatggagcgttcaagcttgtaaagaagcaggtttatagatctaaacccgagatttctttg 364
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 aatggagcgttcaagcttgtaaagaagcaggtttatagatctaaactcgagatttctttg 564

                                                                       
Query: 365 gagatttgaggcaatttgagtcagctagtaaaagccagtaaggaagaaaacggctcctcc 424
           |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 565 gagacttgaggcaatttgagtcagctagtaaaagccagtaaggaagaaaatggctcctcc 624

                                                                       
Query: 425 aatccccccatgttacagacatgaacgcaaaataaagtcttaaggtttactttatgttct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatccccccatgttacagacatgaacgcaaaataaagtcttaaggtttactttatgttct 684

                                                                       
Query: 485 cccatttaaccctctttcccttaactaaacgatgaagttgacagcaaagaaaactagatc 544
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 685 cccatttaaccctctttcccttaactaaaggatgaagttgacagcaaagaaaactagatc 744

                             
Query: 545 tctgaatctttactaaag 562
           ||||||||||||||||||
Sbjct: 745 tctgaatctttactaaag 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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