BAC Information

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BAC

Clone NameMSMg01-484D02
Chromosome16 (Build37)
Map Location 88,271,427 - 88,407,607
singlet/doubletdoublet
Overlap geneGrik1
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901
Downstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484D02.T7 (MSMg01no484_d02.b1)MSMg01-484D02.TJ (MSMg01no484_d02.g1)
ACCAG563940AG563941
length738749
length of high quality
(start - end)		681 (50 - 730)668 (82 - 749)
definitionCHROMAT_FILE: MSMg01no484_d02.b1 PHD_FILE: MSMg01no484_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:40 2005CHROMAT_FILE: MSMg01no484_d02.g1 PHD_FILE: MSMg01no484_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,271,427 - 88,272,106)(88,407,033 - 88,407,607)
sequence
NNNNAACTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTCATTGTCAACTTCTTGAACACATAGTTCATGCATCTTCC
ATGAATATGTGATTAGTGGGTATGTTGAAGTGTTTTAAAAGTTTGGAGCT
TCGCCACAGAGCGTGCTGTCCAATTCCCATCCCTGAATTTAGGTTAAGCA
CTAATCAGTATCTTGTTTGTAGGCATCTTAAGAAAAATACGTCACTGATT
TTATTTTCTGTGAAATAAGGTTAAGAAGAATACATGCTAAACCTACAAAC
TTATACTTACGTGTAGTTCTGTTTAACATTTTGGGGAAGTTAGGAGATAT
TGGTCCTGTGCTTTGTGGCGTGTTAGCAGTATTTTTGGCCATAGCAGTTC
CCTCTCCCCCACGCAGAAGCAAACAGAAATATCTCCAAGCATTTGTAAAT
GGCTTAAAGAGGAGGCAGGTCACTTGTGGCTGAATAGAACTGTTTTGAGG
GAAGGATTTGAATTAATTTTTTTCCCACAAATAAGGTGCTACTGATACAG
GAGTGCAAAGCTTTTCTACTCTACCTCGCAACGGAAAGGAGAGGTTGGCT
GTCTAATCTTCATGGCACAGCCCACTGAGAACATGATTAATTCAAATTGC
TGTCGTTCTTAATGGTTTGATTTTTACAGTTTTGCAAATATCTTATTCTG
TAATCATTCCCTGAGGGTTCTCAAGTAGAAGTCGAGTC

NNCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAGGTTGCCAGTCTAC
AACTGGAGTACAAAGAAGAGGAGGAAAAGGAGGAGGAGGAGCAAGAAGAA
GAAGAACAAGAGAAAGAACAAGAAGGAGGAGGAGAAGCAGAAAGTAAAAG
AAAGAGAAGAAGAAGGAGGAGGAAAAAGAACAAAGAACAAGAAAAAGAAG
AACAAGAGAAAGAACAAGAAGGAGGAGGAGAAGTAAAAAGAGGAGGAGAA
GCAGAAAGTAAAAGAAGAAAGAGAAGAAGAAGGAGGAGGAGGAGAGGAAG
AAGAAGAAAGAAGGAGGAGAAGGAGAAGGCAAGGACCAATACCTGACATT
GTCCTCAGATATCTAGATGCACACCAGGGCATGCTTGTGGGCCCAAATTT
ACACACACACATTGACACACAGAGATTTTTAAACATTGATGTACCAATAA
ACTATTGATTTATTGAAGCTTGCACAATGACTATCTTTTTATTTGCATGC
TAAAATGCAAAGCATTAATATTTCAGATCAAAATGTGGGTGAGTGTGAGT
TAGAAAAGCTTCATGTACTGGTCTGAGTTATGGGCTGAATTATTGGCTAC
TCATGCCCACCTCTCTTGCGCGCGCCCCCAACTCGCCAGCAAGAACGACG
CTGCTACAGGATCCTTCTGCACACGTTTATTCAGTCCTATTTCTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_d02.b1 MSMg01no484_d02.b1 CHROMAT_FILE:
MSMg01no484_d02.b1 PHD_FILE: MSMg01no484_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:40 2005
         (681 letters)



>mm_chr16_88271224_88272306
          Length = 1083

 Score = 1245 bits (644), Expect = 0.0
 Identities = 671/680 (98%), Gaps = 2/680 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttcattgtcaacttcttgaacacatagttcatgcatcttccatgaatatgtga 63
           ||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcagtgtaaactccttgaacacatagttcatgcatcttccatgaatatgtga 263

                                                                       
Query: 64  ttagtgggtatgttgaagtgttttaaaagtttggagcttcgccacagagcgtgctgtcca 123
           |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| 
Sbjct: 264 ttagtgggtatgttgaagtgttttaaaagtttggagcttcaccacagagcgggctgtccg 323

                                                                       
Query: 124 attcccatccctgaatttaggttaagcactaatcagtatcttgtttgtaggcatcttaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attcccatccctgaatttaggttaagcactaatcagtatcttgtttgtaggcatcttaag 383

                                                                       
Query: 184 aaaaatacgtcactgatttta-ttttctgtgaaataaggttaagaagaatacatgctaaa 242
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 384 aaaaatacgtcactgattttatttttctgtgaaataaggttaagaagaatacatgccaaa 443

                                                                       
Query: 243 cctacaaacttatacttacgtgtagttctgtttaacattttggggaagttaggagatatt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctacaaacttatacttacgtgtagttctgtttaacattttggggaagttaggagatatt 503

                                                                       
Query: 303 ggtcctgtgctttgtggcgtgttagcagtatttttggccatagcagttccctctccccca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggtcctgtgctttgtggcgtgttagcagtatttttggccatagcagttccctctccccca 563

                                                                       
Query: 363 cgcagaagcaaacagaaatatctccaagcatttgtaaatggcttaaagaggaggcaggtc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cgcagaagcaaacagaaatatctccaagcatttgtaaatggcttaaagaggaggcaggtc 623

                                                                       
Query: 423 acttgtggctgaatagaactgttttgagggaaggatttgaattaattttttt-cccacaa 481
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 624 acttgtggctgaatagaactgttttgagggaaggatttgaattaattttttttcccacaa 683

                                                                       
Query: 482 ataaggtgctactgatacaggagtgcaaagcttttctactctacctcgcaacggaaagga 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ataaggtgctactgatacaggagtgcaaagcttttctactctacctcgcaacggaaagga 743

                                                                       
Query: 542 gaggttggctgtctaatcttcatggcacagcccactgagaacatgattaattcaaattgc 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaggttggctgtctaatcttcatggcacagcccactgagaacatgattaattcaaattgc 803

                                                                       
Query: 602 tgtcgttcttaatggtttgatttttacagttttgcaaatatcttattctgtaatcattcc 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgtcgttcttaatggtttgatttttacagttttgcaaatatcttattctgtaatcattcc 863

                               
Query: 662 ctgagggttctcaagtagaa 681
           ||||||||||||||||||||
Sbjct: 864 ctgagggttctcaagtagaa 883


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1083
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1073
Effective search space:   719983
Effective search space used:   719983
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no484_d02.g1 MSMg01no484_d02.g1 CHROMAT_FILE:
MSMg01no484_d02.g1 PHD_FILE: MSMg01no484_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:40 2005
         (668 letters)



>mm_chr16_88406536_88407607
          Length = 1072

 Score = 1046 bits (541), Expect = 0.0
 Identities = 563/575 (97%), Gaps = 10/575 (1%)
 Strand = Plus / Minus

                                                                        
Query: 18   acaactggagtacaaagaagaggaggaaaaggaggaggaggagcaagaagaagaagaaca 77
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 acaactggagtacaaagaagaggaggaaaaggaggaggaggagcaagaagaagaagaaca 1013

                                                                        
Query: 78   agagaaagaacaagaaggaggaggagaagcagaaagtaa---aagaaagagaagaagaag 134
            |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||
Sbjct: 1012 agagaaagaacaagaaggaggaggagaagcagaaagtaaaagaagaaagagaagaagaag 953

                                                                        
Query: 135  gaggaggaaaaagaacaaagaacaagaaaaagaagaacaagagaaagaacaagaaggagg 194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952  gaggaggaaaaagaacaaagaacaagaaaaagaagaacaagagaaagaacaagaaggagg 893

                                                                        
Query: 195  aggagaagtaaaaagaggaggagaagcagaaagtaaaagaagaaagagaagaagaaggag 254
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892  aggagaagtaaaaagaggaggagaagcagaaagtaaaagaagaaagagaagaagaaggag 833

                                                                        
Query: 255  gaggaggagaggaagaagaaga---aagaaggaggagaaggagaaggcaaggaccaatac 311
            ||||||||||||||||||||||   |||||||||||| ||||||||||||||||||||||
Sbjct: 832  gaggaggagaggaagaagaagaaagaagaaggaggaggaggagaaggcaaggaccaatac 773

                                                                        
Query: 312  ctgacattgtcctcagatatctagatgcacaccagggcatgcttgtgggcccaaatttac 371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772  ctgacattgtcctcagatatctagatgcacaccagggcatgcttgtgggcccaaatttac 713

                                                                        
Query: 372  acacacacattgacacacagagatttttaaacattgatgtaccaataaactattgattta 431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712  acacacacattgacacacagagatttttaaacattgatgtaccaataaactattgattta 653

                                                                        
Query: 432  ttgaagcttgcacaatga----ctatctttttatttgcatgctaaaatgcaaagcattaa 487
            ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||
Sbjct: 652  ttgaagcttgcacaatgactatctatctttttatttgcatgctaaaatgcaaagcattaa 593

                                                                        
Query: 488  tatttcagatcaaaatgtgggtgagtgtgagttagaaaagcttcatgtactggtctgagt 547
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 592  tatttcagatcaaaatgtgggtgagtgtgagttagaaaagcttcatgtactagtctgagt 533

                                               
Query: 548  tatgggctgaattattggctactcatgcccacctc 582
            |||||||||||||||||||||||||||||||||||
Sbjct: 532  tatgggctgaattattggctactcatgcccacctc 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1072
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1062
Effective search space:   698796
Effective search space used:   698796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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