BAC Information

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BAC

Clone NameMSMg01-487I11
Chromosome16 (Build37)
Map Location 65,015,962 - 65,016,333
singlet/doubletsinglet
Overlap geneHtr1f
Upstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, LOC668247
Downstream geneLOC672931, Pou1f1, Chmp2b, EG383186, Vgll3, LOC664846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487I11.T7 (MSMg01no487_i11.b1)MSMg01-487I11.TJ (MSMg01no487_i11.g1)
ACCAG566471AG566472
length865746
length of high quality
(start - end)
---665 (77 - 741)
definitionCHROMAT_FILE: MSMg01no487_i11.b1 PHD_FILE: MSMg01no487_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:10 2005CHROMAT_FILE: MSMg01no487_i11.g1 PHD_FILE: MSMg01no487_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTTGCCCTAAAATTTGCGGGCCGCCGAAAAGAANNACCACAGTGCTTC
ACCTGCTGNGNGAANNNNNNNCTTTTTGCCCATTACCGGGGGGGNNNNNN
NGNGCNNNGNNAAGAACACCANNNCACGCAGGAACNAGTTTTCACCCCTA
ATAGCTTGTCCAACTGTAATTAAGATCTGTTGCTTCTGTTTCTATGAGAT
ACTGTCGTTAGGCTGGTTGAGGCAATTATTCTCCGGTATTAACTCCCACT
GGTAAATGGTAAAATATCTTATCACAGTGTTTAACAAAAAACACATTTTT
TATATACTCTAACTCACTGCACCGTCACAGCTTTAGCAGCTACAGTGTCG
CTTAAAATTACCGCGACGTTTTTTTTTTTTTTCTCACAGCAGCAAAGGCG
ACAAGCCAGGAAAGCCCTAACCTTCTGTCTACCCAGCCATGACAATGGAA
GCACCATCACTACAAATATTCAGGAAAAAAACACCACAGATGTAAGTATT
TTCTTTTCCTTTCACAAACACTATAGTGAAAGCTTGAATGCTGTGCATAC
CATATTGGTAATGTTACCTGCTCCCTCGGTTCATTCTGTATTTGCATAAA
CCGTAGTCCTAGATGACCTCGTCTCTGAGCATTCTGTTTTTGGGGAGGGG
GACACCTTTTCAATTCCATTCATAAAAACTGTTTTCACTTCTATTGGACT
ATTTAATAATACTAATATAATCTACTAACTATCTACCAAACAACTCTAGG
TTTCCCCATTATTTTGTTTTTTCTAATTGGCCCAACGACAGATGTGCCGA
AGTTTCCTTTCCTTGGCTCTGCTGTATACCTATATTCAAGGTAATGTGTC
CGACTGGCGTGTTTN
TCGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGAGGTCCCCCTGTCTCTAAGT
TTAAAGTGCTGGGATTAAAGGTGTATGCCACTATGCCTGCCATATTGTTT
TGTTGAAGGCAAGTAAGCTTTCAGCATGCGGAATGCACAGTCGAATAGCA
GATTGAGTACTTAGCCTTAAATGGTCTCAATGAATACTATTAACTTTTTG
AAACTCTCTATGTAGATCAGGTTGTCCTCGAACCCACAGAGTTCTTCTGT
CTGTGTTAAACTCACCACTACACATGGCTTATTTTCAGAGAAAGATATCA
CCACACTTACTATCACTTAAAAGATTAGAGTAGGGGCTGGTGAGATGGCT
CAGTGGTTAAGAGCACCGACTGCTCTTCCGAAGGTCCCAAGTTCAAATCC
CAGCAACCACATGGTGGCTCACAACCATCTGGAACGAAATCTGATGCCCT
CTTCTGTAGTATCTGAAGACAGCTACAGTGTACTTACATATAATAAATAA
ATGAATCTTAAAAAAAAAACCGACTAATCACTTTCACATTTAAAACAAAA
AGATTAGAGTAATAATAAAACTTCCAAAGGAGGGAAAAAAAAAGCCCTTC
ATATAGATTTGCTGGACAATTTTTATCAAACTTCTAACATAAATAAAACA
CAATCCTGGGACTAGAGAGAAAGCTTAGTTGGTAAATTCTTAGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_i11.g1 MSMg01no487_i11.g1 CHROMAT_FILE:
MSMg01no487_i11.g1 PHD_FILE: MSMg01no487_i11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:10 2005
         (665 letters)



>mm_chr16_65015269_65016333
          Length = 1065

 Score =  688 bits (356), Expect = 0.0
 Identities = 368/372 (98%)
 Strand = Plus / Minus

                                                                        
Query: 294  aaagattagagtaggggctggtgagatggctcagtggttaagagcaccgactgctcttcc 353
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 aaagattagagtaggggctggcgagatggctcagtggttaagagcaccgactgctcttcc 1006

                                                                        
Query: 354  gaaggtcccaagttcaaatcccagcaaccacatggtggctcacaaccatctggaacgaaa 413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 gaaggtcccaagttcaaatcccagcaaccacatggtggctcacaaccatctggaacgaaa 946

                                                                        
Query: 414  tctgatgccctcttctgtagtatctgaagacagctacagtgtacttacatataataaata 473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945  tctgatgccctcttctgtagtatctgaagacagctacagtgtacttacatataataaata 886

                                                                        
Query: 474  aatgaatcttaaaaaaaaaaccgactaatcactttcacatttaaaacaaaaagattagag 533
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885  aatgaatctttaaaaaaaaaccgactaatcactttcacatttaaaacaaaaagattagag 826

                                                                        
Query: 534  taataataaaacttccaaaggagggaaaaaaaaagcccttcatatagatttgctggacaa 593
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 825  taataataaaacttccaaaggagggaaaaaaaaaacccttcatatagatttgctggacaa 766

                                                                        
Query: 594  tttttatcaaacttctaacataaataaaacacaatcctgggactagagagaaagcttagt 653
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 765  tttttatcaaacttctaacataaataaaacacaatcctgggactagagagatagcttagt 706

                        
Query: 654  tggtaaattctt 665
            ||||||||||||
Sbjct: 705  tggtaaattctt 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)