Query= MSMg01no492_a20.b1 MSMg01no492_a20.b1 CHROMAT_FILE:
MSMg01no492_a20.b1 PHD_FILE: MSMg01no492_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:10 2005
(626 letters)
>mm_chr16_60306558_60307583
Length = 1026
Score = 1180 bits (610), Expect = 0.0
Identities = 622/626 (99%)
Strand = Plus / Minus
Query: 1 gaaagtgacacatgaaaacaatatgcttgttattatcaatagttaaaaccaaatggatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 gaaagtgacacatgaaaacaatatgcttgttattatcaatagttaaaaccaaatggatag 767
Query: 61 caagggttcccatttaaaaatcaatcaatggatgccagaatatcttagtcagcatgaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 caagggttcccatttaaaaatcaatcaatggatgccagaatatcttagtcagcatgaatc 707
Query: 121 attgatatttgcagagggcatttttttctcattccaactctagcatggaataggcaagaa 180
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 706 attgatatttgcagagggcatttttttttcattccaaatctagcatggaataggcaagaa 647
Query: 181 atggcaccaaatggggtccagaaaatgacccaaactttaatgcataacaagatcatacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 atggcaccaaatggggtccagaaaatgacccaaactttaatgcataacaagatcatacca 587
Query: 241 ctgctttgaaagatggtcatattgccgagacaggaaaaaaaaagtatatagggaaagaag 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 586 ctgctttgaaagatggtcatattgccgagacagaaaaaaaaaagtatatagggaaagaag 527
Query: 301 acagtgattggcccaaagtacatgtatccattatttgatgttgtggacacataatatcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 acagtgattggcccaaagtacatgtatccattatttgatgttgtggacacataatatcta 467
Query: 361 ggagataaagatataattttccaatgataatttctctatatatagctctaacagaagcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ggagataaagatataattttccaatgataatttctctatatatagctctaacagaagcta 407
Query: 421 ttacatggtacaatacagagagacaatctcctgtcgtatctttattaattttgttcttgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 406 ttacatggtacaatacagagagacaatctcctgtcgtatctttattaattttgttctggt 347
Query: 481 gtggaaggaacacattagcagagtggaattgctctcaatctctttggaacctgggtctca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gtggaaggaacacattagcagagtggaattgctctcaatctctttggaacctgggtctca 287
Query: 541 ttgacagatgtcactgttacttttcatggtgacattctgaagactcattcatgattactt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ttgacagatgtcactgttacttttcatggtgacattctgaagactcattcatgattactt 227
Query: 601 atgcattcaatagtattctttctttc 626
||||||||||||||||||||||||||
Sbjct: 226 atgcattcaatagtattctttctttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no492_a20.g1 MSMg01no492_a20.g1 CHROMAT_FILE:
MSMg01no492_a20.g1 PHD_FILE: MSMg01no492_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:10 2005
(534 letters)
>mm_chr16_60123465_60124397
Length = 933
Score = 1006 bits (520), Expect = 0.0
Identities = 529/532 (99%), Gaps = 1/532 (0%)
Strand = Plus / Plus
Query: 1 ctctaagaaaacgagaagtgaactattcttgtttaacttaactgtctgcactaatttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctaagaaaacgagaagtgaactattcttgtttaacttaactgtctgcactaatttttc 260
Query: 61 ataatcaccctagcatactcatagcatgattaatctattcttcacatgaactctttatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataatcaccctagcatactcatagcatgattaatctattcttcacatgaactctttatca 320
Query: 121 ttatttcattttacagcatgaagaaatagatagaagaggcaagatttttgctatcacaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatttcattttacagcatgaagaaatagatagaagaggcaagatttttgctatcacaaa 380
Query: 181 tcattgattagaaaaagcttaagttggacccaccctggctaccattactgggctatggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcattgattagaaaaagcttaagttggacccaccctggctaccattactgggctatggtt 440
Query: 241 aactcaaaagtgacattattctgaaagggatggctgcggttaaaaatggtggaacatgaa 300
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 aac-caaaagtgacattattctgaaagggatggctgcagttaaaaatggtggaacatgaa 499
Query: 301 cacacccatttaatttatgggtcatttatttcatgtatgtgagcaaatgatgtgacatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cacacccatttaatttatgggtcatttatttcatgtatgtgagcaaatgatgtgacatat 559
Query: 361 cagtgtagattcaactaataatttttaccccccggagcttgtgtctctagctgcatatgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cagtgtagattcaactaataatttttaccccccggagcttgtgtctctagctgcatatgt 619
Query: 421 atcagaagatgacctagttggccatcagtggaaatagaggcccattggtcatgcaaactt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atcagaagatgacctagttggccatcagtggaaatagaggcccattggtcatgcaaactt 679
Query: 481 tatatgcctcagtacaggggaacaccagggccaagaaatgggggggagggga 532
||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 680 tatatgcctcagtacaggggaacgccagggccaagaaatgggggggagggga 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 933
Length adjustment: 10
Effective length of query: 524
Effective length of database: 923
Effective search space: 483652
Effective search space used: 483652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
