BAC Information

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BAC

Clone NameMSMg01-492J17
Chromosome16 (Build37)
Map Location 81,505,487 - 81,505,823
singlet/doubletsinglet
Overlap geneNcam2
Upstream geneLOC621365, LOC100039724
Downstream geneLOC621470, LOC435484, Pgk1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492J17.T7 (MSMg01no492_j17.b1)MSMg01-492J17.TJ (MSMg01no492_j17.g1)
ACCAG570323AG570324
length716716
length of high quality
(start - end)
54 (66 - 119)552 (72 - 623)
definitionCHROMAT_FILE: MSMg01no492_j17.b1 PHD_FILE: MSMg01no492_j17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:53 2005CHROMAT_FILE: MSMg01no492_j17.g1 PHD_FILE: MSMg01no492_j17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGNGA
ATTCTAGTATTTATCTATATATATATATATATATATATATATATATACAC
ACACACACTGTGAATTTAAATCTTAAGTTCAGCTCTCATCTCACAAATAT
GCATATAGATCCCTTATGAGTCCTGAAATTAAATTATGCCNATTTACATG
GAAACCNNNNNNTGCACCATATATGAGGGACTCTGGGGTGGGGGGGGGGG
GGGGGGGGCGGTGGGGGGACGGGGGGGGGGGCCGCAGGCGTTGCCGCGGG
GCGNNNNNCTNAATAACCTCCGCCAGCCCAGACGTCCAGGGNNNCTNNNN
TNTNNNNNNNNNNNTCTAAAAANNNNNTCNNNNNNNNNNNNNNNNNAAAC
CACACATACCTTTTNNCATCTCCCCNNCTNTNNNNNNTNNNNNTNTTNNN
TNTNNNNNGGGGGNNCTNTNNNNNNNNTTNNNNNNNNNNNTNNNNTNTTT
NTNNTTNNNNTNTTNNTTTTTNTTNNTTTTTNTTNNNNTNNTNNTTCCCT
TNTTTTNTTNTTTTATTTTTTNTNTNTTTCCCTTTTANTTTNNTTTTATA
TTAAATATAATATTCTCANNTTNTNTTTNNAATTNTNNNNTTATTTTTTT
ATATTTTATTTTTAATTTTTNNNATATTTNTTTTTTTTTTTTTTATATTT
TATTATTTTTTTTTTG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTCCTTTCTCTTCACCTTACTTAGTGAG
ATGAAATTATGATGTTTTTTTACTATAATGGTTTGAATGAGAATGAGCCC
CTTATAAGATAATATATTTGAATGTTTTGTCCCTAGTTTGTAGAACTGTT
TAGGAAGGGTTAGGAAGTTTGGACTTGTTAATAGTGGTTTGCGACTTTAA
GCTTTCAATTCCCATACCAGCCTCAGTCTTACTCCTTCTACCCTATATGT
GCAGAACATAATTATCTCTTTGCTCATGTCCCTGTGCCATGTCCACCTGC
CCGCTGCCATGCTCCTTGTCATGAGGCCGAGGCTCTCTCCCTTTGCAACT
ATAAGCAAGACTCCAATTAAATGCTCCCTCTTCTAATGTGGCCTTAGCTA
TAACATTTCTTCACAGAAATAGAGCAGTAACGAAGAGAAATGCCTCAATG
TGAAATTTCAGAATCATAAATAATAGAAGCAATTCTCTTTTTTATTTTGC
TGTTGTTTAGAGAGCCTTTCCATAATACTTCATTTAAACAAAATCCATAA
CATTTCTAAACACGTTCTCATGCCAGGAGCCATCAAGGAGAAGCTAAAAA
ATAGCAAGTAATCTTCCTGAGATGGTTCCAACATGGACTGTAATGTTAAT
GACAGATTTGCAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_j17.g1 MSMg01no492_j17.g1 CHROMAT_FILE:
MSMg01no492_j17.g1 PHD_FILE: MSMg01no492_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:53 2005
         (552 letters)



>mm_chr16_81504872_81505823
          Length = 952

 Score =  621 bits (321), Expect = 0.0
 Identities = 333/337 (98%)
 Strand = Plus / Minus

                                                                       
Query: 216 tctaccctatatgtgcagaacataattatctctttgctcatgtccctgtgccatgtccac 275
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 952 tctaccctatatgtgcagaacataaaaatctctttgctcatgtccctgtgccatgtccac 893

                                                                       
Query: 276 ctgcccgctgccatgctccttgtcatgaggccgaggctctctccctttgcaactataagc 335
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 ctgcccgctgccatgctccttgtcatgaggccgaggctctctccctttgcaactataagc 833

                                                                       
Query: 336 aagactccaattaaatgctccctcttctaatgtggccttagctataacatttcttcacag 395
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 aagaccccaattaaatgctccctcttctaatgtggccttagctataacatttcttcacag 773

                                                                       
Query: 396 aaatagagcagtaacgaagagaaatgcctcaatgtgaaatttcagaatcataaataatag 455
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 aaatagagcagtaacgaagagaaatgcctcaatgtgaaatttcagaatcataaataatag 713

                                                                       
Query: 456 aagcaattctcttttttattttgctgttgtttagagagcctttccataatacttcattta 515
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 aagcaattctcttttttattttgctgttgtttagagagcctttccataatacttcattta 653

                                                
Query: 516 aacaaaatccataacatttctaaacacgttctcatgc 552
           |||||||||||||| ||||||||||||||||||||||
Sbjct: 652 aacaaaatccataaaatttctaaacacgttctcatgc 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)