Query= MSMg01no493_o10.b1 MSMg01no493_o10.b1 CHROMAT_FILE:
MSMg01no493_o10.b1 PHD_FILE: MSMg01no493_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:36 2005
(687 letters)
>mm_chr16_75219245_75220331
Length = 1087
Score = 1220 bits (631), Expect = 0.0
Identities = 670/683 (98%)
Strand = Plus / Minus
Query: 5 gaattcttcactttcttcttactttgctatatgatatttcatcataaaatccccgttgga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 gaattcttcactttcttcttactttgctatatgatatttcatcataaaatccccgttgga 828
Query: 65 tgttatctgccgtgagatgctgacaagaatcagcagattcagacctcactcttgaacact 124
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 tgttatctgccatgagatgctgacaagaatcagcagattcagacctcactcttgaacact 768
Query: 125 ggtcaaggaaaactttttgtgttggcaaaagccagggcaacacaaatccagctaacatgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ggtcaaggaaaactttttgtgttggcaaaagccagggcaacacaaatccagctaacatgc 708
Query: 185 atccttcacaaatagcatttggaccatgtaaactcacgcctgcttacttctctgccgtgt 244
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 707 atccttcacgaatagcatttggaccatgtaaactcacgcctgcttacttctctgccttgt 648
Query: 245 aatttgtaagctgctcaaagacagaaatgtcgaaaacagaatcatctttatattggaact 304
||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||
Sbjct: 647 aatttgtaagctgctcaaagacagaaatgtcaaaaacagaatcacctttaaattggaact 588
Query: 305 tgagttctatgttagcatccagctatgtcctttgctttaagtataattccctttttagta 364
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 587 tgagttctatgttagcatccagctatgtccttcactttaagtataattccctttttagta 528
Query: 365 tatttgggagttttaaattgaaacaaattaatatgtgaaaatattgactttgcttatttg 424
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 527 tatttgggagttttaaattgaaacaaattaatttgtgaaaatattgactttgcttatttg 468
Query: 425 atagaaaaataactattgcataacaattataggtgtgtactgatatgataacctgacttc 484
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 467 atagaaatataactattgcataacaattataggtgtgtactgataagataacctgacttc 408
Query: 485 aaagctgggctcctttatttaatctgggggatttatactagactttctggctattcacaa 544
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 407 aaagctgggctcctttatttaatctgggggatttacactagactttctggctattcacaa 348
Query: 545 agaatggctactcttggtatcagcatggaaatctggccttcctagggactggcagtcatt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 agaatggctactcttggtatcagcatggaaatctggccttcctagggactggcagtcatt 288
Query: 605 atcagagtctccagctgaaatagaaccacgggcagtggctgtaggcttcatctcttcagt 664
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 agcagagtctccagctgaaatagaaccacgggcagtggctgtaggcttcatctcttcagt 228
Query: 665 gttaacaattttaggctaagcag 687
|||||||||||||||||||||||
Sbjct: 227 gttaacaattttaggctaagcag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_o10.g1 MSMg01no493_o10.g1 CHROMAT_FILE:
MSMg01no493_o10.g1 PHD_FILE: MSMg01no493_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:36 2005
(670 letters)
>mm_chr16_75161391_75162460
Length = 1070
Score = 1251 bits (647), Expect = 0.0
Identities = 665/671 (99%), Gaps = 2/671 (0%)
Strand = Plus / Plus
Query: 1 aaaatggatcagtaagtattactggatgtctggtgcttagtgtctagatttgtgtttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaatggatcagtaagtattactggatgtctggtgcttagtgtctagatttgtgtttcct 260
Query: 61 taggtttttttgggttttctttttgtcatattcaaagaattgggggtgaaagctgcatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggtttttttgggttttctttttgtcatattcaaagaattgggggtgaaagctgcatgc 320
Query: 121 agaattcaaaatagcaaagaaagtatttgatcgcgatgtactagtaacaatataggatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaattcaaaatagcaaagaaagtatttgatcgcgatgtactagtaacaatataggatgt 380
Query: 181 caagaatgagggagaactacgtgagccaagacttatttacaggcatccctttcagtcatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagaatgagggagaactacgtgagccaagacttatttacaggcatccctttcagtcatc 440
Query: 241 actaatatttcatataatcatttttggttttgattgacaggtttggactatataagcttt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 actaatatttcatataatcatttttggttttgattgacaggtttggactatataagtttt 500
Query: 301 gacttactactcattactatgatgaaaatgattttattattatgtatgcctaattatata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacttactactcattactatgatgaaaatgattttattattatgtatgcctaattatata 560
Query: 361 cagacagatcgtggtaaataaaagattttcactgaaatttctctcagatttacacatact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagacagatcgtggtaaataaaagattttcactgaaatttctctcagatttacacatact 620
Query: 421 gaccaactgaccaagccaacaaaaccaggccatggaagatcaggtaagcccaggtttgtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaccaactgaccaagccaacaaaaccaggccatggaagatcaggtaagcccaggtttgtt 680
Query: 481 tgtttgtttgtttgtctgttttttcttttctttttt-cttttttttctttctttttctct 539
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 tgtttgtttgtttgtttgttttttcttttctttttttcttttttttctttctttttctct 740
Query: 540 -tttttttttaaagaaagttggatattttctttatttatatttcaaatgttatcttcttt 598
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttttttttttaagaaagttggatattttctttatttatatttcaaatgttatcttcttt 800
Query: 599 ccaggtctctccttaggaaaccatctatcccaccccctcccctgcctctatgagtgtgct 658
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccaggtctctcctcaggaaaccatctatcccaccccctcccctgcctctatgagtgtgct 860
Query: 659 ccccctaccat 669
|||||||||||
Sbjct: 861 ccccctaccat 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
