Query= MSMg01no494_d04.b1 MSMg01no494_d04.b1 CHROMAT_FILE:
MSMg01no494_d04.b1 PHD_FILE: MSMg01no494_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:59 2005
(447 letters)
>mm_chr16_35527092_35527938
Length = 847
Score = 775 bits (401), Expect = 0.0
Identities = 434/445 (97%), Gaps = 3/445 (0%)
Strand = Plus / Plus
Query: 5 gaattcatcgttgaataactccctctctttcccattgctattcac-ttttgtatcccaga 63
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 204 gaattcattgttgaataactccctctctttcccattgctattcactttttgtatcccaga 263
Query: 64 ggatgggaacaattgcagaacttgaggtttttaaaaaaacatcttggccagtaaaggaca 123
||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||
Sbjct: 264 ggatgggaacaattgcagaacttgagg-ttttcaaaaaacatcttggctagtaaaggaca 322
Query: 124 acag-ttatgttttcattcttcgtttcttttatcataaatgtgaacatacatttttcaaa 182
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 323 acagtttatgttttcattctttgtttcttttatcataaatgtgaacatacatttttcaag 382
Query: 183 tgtctcatcagtgtgtccaataataaaataatgcagagagatctgggctgggtatgtggc 242
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgtctcatcaatgtgtccaataataaaataatgcagagagatctgggctgggtatgtggc 442
Query: 243 tcagtggtagagcaccagcctagggggtccattcccaggagtgcaaataaaatcaaagca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcagtggtagagcaccagcctagggggtccattcccaggagtgcaaataaaatcaaagca 502
Query: 303 aaccaacagcagaacacagctcctgtgcttctgctagctccttagccctcttgtggatcc 362
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaccaacagcagaacacagctcttgtgcttctgctagctccttagccctcttgtggatcc 562
Query: 363 tctgctacaggtatgtgcaatggattggcctgatgctgtttgtattctaatgttaatcct 422
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tctgctacaggtgtgtgcaatggattggcctgatgctgtttgtattctaatgttaatcct 622
Query: 423 ggttcctcaagaggggctgaccctc 447
|||||||||||||||||||||||||
Sbjct: 623 ggttcctcaagaggggctgaccctc 647
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no494_d04.g1 MSMg01no494_d04.g1 CHROMAT_FILE:
MSMg01no494_d04.g1 PHD_FILE: MSMg01no494_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:59 2005
(558 letters)
>mm_chr16_35673909_35674876
Length = 968
Score = 978 bits (506), Expect = 0.0
Identities = 549/568 (96%), Gaps = 10/568 (1%)
Strand = Plus / Minus
Query: 1 tttcagtcattttagaaaatgtgtgggtaaaataatgctaataaagaaatagtcactgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tttcagtcattttagaaaatgtgtgggtaaaataatgctaataaagaaatagtcactgct 709
Query: 61 ctcctccactacatcccacggaggactaagcaggagctggcgtgatgccgaccggaagct 120
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 708 ctcctccactacatcccacggaggactaagcaggagctggcgttatgccaaccggaagct 649
Query: 121 gacggcctcttcagggcagggagctgagatgtttaggagagcggcaggaagcagtgccag 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 648 gatggcctcttcagggcagggagctgagatgtttaggagagcggcaggaagcagtgctag 589
Query: 181 gttcctctgttctctgaaaggaagtttaaggtaagaatcctaagcatagccaatttttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gttcctctgttctctgaaaggaagtttaaggtaagaatcctaagcatagccaatttttcc 529
Query: 241 tgttctggttaacgactccctgggcagctgtttgggtggtggaaaaagggacccaagagt 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tgttctggttaacgattccctgggcagctgtttgggtggtggaaaaagggacccaagagt 469
Query: 301 gaattctgagccatttagtgggtatgcttacaacagtatgctcccgggggctgctggaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gaattctgagccatttagtgggtatgcttacaacagtatgctcccgggggctgctggaat 409
Query: 361 cagaaccgtgccagccatctttactaaggtgaacacggcctggaagtgtgagagtccagc 420
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 408 cagaaccgtgtcagccatctttactaaggtgaacatggcctggaagtgtgagagtccagc 349
Query: 421 ttctccctctttcccctgctttctct-------ccattctccattctccattctaggttt 473
|||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 348 ttctccctctttcccctgctttctcttcattctccattctccattctccattctaggttt 289
Query: 474 tggagtggtgtt-ttcattgtacccgagcagatttcttcctctgtaaggttttttta--a 530
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 288 tggagtggtgttcttcattgtacccgagcagatttcttcctctgtgaggtttttttttta 229
Query: 531 atctgatggtttaaataaaatggctccc 558
||||||||||||||||||||||||||||
Sbjct: 228 atctgatggtttaaataaaatggctccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 968
Length adjustment: 10
Effective length of query: 548
Effective length of database: 958
Effective search space: 524984
Effective search space used: 524984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
