BAC Information

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BAC

Clone NameMSMg01-494I24
Chromosome16 (Build37)
Map Location 45,646,019 - 45,800,450
singlet/doubletdoublet
Overlap geneBC016579, Tmprss7, Tagln3, Abhd10, Phldb2
Upstream geneBC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2
Downstream geneEG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494I24.T7 (MSMg01no494_i24.b1)MSMg01-494I24.TJ (MSMg01no494_i24.g1)
ACCAG571813AG571814
length753754
length of high quality
(start - end)		514 (53 - 566)627 (60 - 686)
definitionCHROMAT_FILE: MSMg01no494_i24.b1 PHD_FILE: MSMg01no494_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:26 2005CHROMAT_FILE: MSMg01no494_i24.g1 PHD_FILE: MSMg01no494_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,799,939 - 45,800,450)(45,646,019 - 45,646,645)
sequence
CTATACGACTCACTATATTTCGAGGATGCGCGGAATTCAAAGAACTTATC
TTGGGTAGTGGGCATGTTTCGCTGTAGCTCACAATAAAATCAAAGGGTTA
ACTGTATTCGCCTAGTGTAGGGGGCTTGGGAACAGGACCAATGCTCAGCA
GGTTAAGAACCCTGCTGTGCAAGCCTAGCAGCCTAGAAACCAAGTGAAGA
GTCAGATGTGGAGGCCTGTGTAATCCCAGCTTTCCTCTAGCAAGATGGGA
GGTAGAGACAGGAAGATCTCCCCAAGAAACTCTTAGGGCAACTAGCCTGC
ATTACACGACACAGTAGCAAAACAAGAGAGATCCTACCTCAAACAAAGTG
AAACAAAAAGGCTAACACCTGATGTCCTTTGACCCCCACATGTGTGCCAT
AGCATGTAGATGCCTCCCCCAACCCCATATACACTGAAATACAGAAGTCT
TGGTTAATGACTAATCTTTTTCAGACTCTTTGTATTGAGGTAACCAGAAA
CTTTTGTTAGTGATATCAGATATCATTGTTTGTTTGGTTTTTTTGTTTGT
TTGGTTTTTTTTTTGTTTTGTTTTGTTTTGTTTTGGATTTTGGTTTTTTT
TTGGATACTTAGTATTTTACTCTTTAAAAATACTAATTAAATTAAATTAT
ACTGTAGTTCTCATACTGCAGTTTGTGCCATGGGACCTAAAAATGGGGCA
TCATGTTCCCTGTGAACATTGGGCTGCCCCTGTCCATGTAACTGTCTTCC
CAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCCATCTCACTAAGTCTTAACCCTTGGCTCTCCCAACGCCAC
CCTTTCTCCTATTTCCCACACACTTCAATCAGTTCTGCAAATATGTGATT
CATATCAATAAGCTTGGTGACTGGGCAGTGGCTGCAGATTGCCTGCTGTC
ATCCCAGATCTACTAGCAGAGCAGCTCTGGGTGTGGCTAGCATGCTCACA
CTCAGGTCAGCCTGCTGTCTCACTCCTTCTTAATCTACTGTGGTCTATAC
TGTCCCACTCAGATTCCTCCCTGAATTTTTTAAGATCTAGCAAAATGATG
TCGAAGTTATTTTAAAACCTTAAAGAAAGGCGACTGTCTTAAAATTTATT
CTCAAATTATTTCAAAATGCCAAGGAGAGATAAAAAGAAATTACAACAAA
CTATGAATGATATATGTTAACTGTCTTAGTTGGGGTTTCGATTGCTATGA
TGAAACACCATCAACAAAAAGGAAGAAAGAGGGTTTTTTGGCTTATGTGT
CCATATGACTGCTCGTCGTCAAAGGGGGCCAAGACAGGAATTCAAGCAGG
GCATCAACCTGGAGGTAGACCTCCTACCTACAGGGGTGCTGCTTCCTGCC
TTGTTCCCCATGATTTGCTCAGTCTGCTTTCTTCTACAACTCAAGACTAC
CTTGCCCAGGGTAGCCCACAATGGGCTGGGCCCTCTCCCATCAATTTCTA
ACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_i24.b1 MSMg01no494_i24.b1 CHROMAT_FILE:
MSMg01no494_i24.b1 PHD_FILE: MSMg01no494_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:26 2005
         (514 letters)



>mm_chr16_45799778_45800691
          Length = 914

 Score =  990 bits (512), Expect = 0.0
 Identities = 512/512 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggtagtgggcatgtttcgctgtagctcacaataaaatcaaagggttaactgtattcgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gggtagtgggcatgtttcgctgtagctcacaataaaatcaaagggttaactgtattcgcc 614

                                                                       
Query: 61  tagtgtagggggcttgggaacaggaccaatgctcagcaggttaagaaccctgctgtgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tagtgtagggggcttgggaacaggaccaatgctcagcaggttaagaaccctgctgtgcaa 554

                                                                       
Query: 121 gcctagcagcctagaaaccaagtgaagagtcagatgtggaggcctgtgtaatcccagctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gcctagcagcctagaaaccaagtgaagagtcagatgtggaggcctgtgtaatcccagctt 494

                                                                       
Query: 181 tcctctagcaagatgggaggtagagacaggaagatctccccaagaaactcttagggcaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tcctctagcaagatgggaggtagagacaggaagatctccccaagaaactcttagggcaac 434

                                                                       
Query: 241 tagcctgcattacacgacacagtagcaaaacaagagagatcctacctcaaacaaagtgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tagcctgcattacacgacacagtagcaaaacaagagagatcctacctcaaacaaagtgaa 374

                                                                       
Query: 301 acaaaaaggctaacacctgatgtcctttgacccccacatgtgtgccatagcatgtagatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 acaaaaaggctaacacctgatgtcctttgacccccacatgtgtgccatagcatgtagatg 314

                                                                       
Query: 361 cctcccccaaccccatatacactgaaatacagaagtcttggttaatgactaatctttttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cctcccccaaccccatatacactgaaatacagaagtcttggttaatgactaatctttttc 254

                                                                       
Query: 421 agactctttgtattgaggtaaccagaaacttttgttagtgatatcagatatcattgtttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 agactctttgtattgaggtaaccagaaacttttgttagtgatatcagatatcattgtttg 194

                                           
Query: 481 tttggtttttttgtttgtttggtttttttttt 512
           ||||||||||||||||||||||||||||||||
Sbjct: 193 tttggtttttttgtttgtttggtttttttttt 162


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no494_i24.g1 MSMg01no494_i24.g1 CHROMAT_FILE:
MSMg01no494_i24.g1 PHD_FILE: MSMg01no494_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:26 2005
         (627 letters)



>mm_chr16_45645819_45646845
          Length = 1027

 Score = 1205 bits (623), Expect = 0.0
 Identities = 626/627 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatctcactaagtcttaacccttggctctcccaacgccaccctttctcctatttcccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatctcactaagtcttaacccttggctctcccaacgccaccctttctcctatttcccac 260

                                                                       
Query: 61  acacttcaatcagttctgcaaatatgtgattcatatcaataagcttggtgactgggcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacttcaatcagttctgcaaatatgtgattcatatcaataagcttggtgactgggcagt 320

                                                                       
Query: 121 ggctgcagattgcctgctgtcatcccagatctactagcagagcagctctgggtgtggcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctgcagattgcctgctgtcatcccagatctactagcagagcagctctgggtgtggcta 380

                                                                       
Query: 181 gcatgctcacactcaggtcagcctgctgtctcactccttcttaatctactgtggtctata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatgctcacactcaggtcagcctgctgtctcactccttcttaatctactgtggtctata 440

                                                                       
Query: 241 ctgtcccactcagattcctccctgaattttttaagatctagcaaaatgatgtcgaagtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtcccactcagattcctccctgaattttttaagatctagcaaaatgatgtcgaagtta 500

                                                                       
Query: 301 ttttaaaaccttaaagaaaggcgactgtcttaaaatttattctcaaattatttcaaaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttaaaaccttaaagaaaggcgactgtcttaaaatttattctcaaattatttcaaaatg 560

                                                                       
Query: 361 ccaaggagagataaaaagaaattacaacaaactatgaatgatatatgttaactgtcttag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaaggagagataaaaagaaattacaacaaactatgaatgatatatgttaactgtcttag 620

                                                                       
Query: 421 ttggggtttcgattgctatgatgaaacaccatcaacaaaaaggaagaaagagggtttttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttggggtttcgattgctatgatgaaacaccatcaacaaaaaggaagaaagagggtttttt 680

                                                                       
Query: 481 ggcttatgtgtccatatgactgctcgtcgtcaaagggggccaagacaggaattcaagcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcttatgtgtccatatgactgctcgtcgtcaaagggggccaagacaggaattcaagcag 740

                                                                       
Query: 541 ggcatcaacctggaggtagacctcctacctacaggggtgctgcttcctgccttgttcccc 600
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggcagcaacctggaggtagacctcctacctacaggggtgctgcttcctgccttgttcccc 800

                                      
Query: 601 atgatttgctcagtctgctttcttcta 627
           |||||||||||||||||||||||||||
Sbjct: 801 atgatttgctcagtctgctttcttcta 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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